RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GKN2Q86XP6 184 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 RBM12BQ8IXT5 1001 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ZCCHC7Q8N3Z6 543 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 OR5AK3PQ8NH89 298 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 PPWD1Q96BP3 646 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ZNF764Q96H86 408 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TRAPPC9Q96Q05 1148 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 SLC35A5Q9BS91 424 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 DCAF13Q9NV06 445 aaKnown RBP13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ANKMY1Q9P2S6 941 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 ATG4BQ9Y4P1 393 aa13.09□□□□□ -0.31
PTPRF-202ENST00000372405 TNRC6BQ9UPQ9 1833 aaKnown RBP13.08□□□□□ -0.31
PTPRF-202ENST00000372405 CACNA1EQ15878 2313 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 A0A0J9YY10 115 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 BCAT2O15382 392 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-202ENST00000372405 AQP9O43315 295 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 HCRTR1O43613 425 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 RETP07949 1114 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 BMP2P12643 396 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 TDGF1P13385 188 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF26P17031 533 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-202ENST00000372405 FNTBP49356 437 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 CASP9P55211 416 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 STXBP1P61764 594 aaKnown RBP13.08□□□□□ -0.32
PTPRF-202ENST00000372405 COL9A2Q14055 689 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-202ENST00000372405 SLC9A5Q14940 896 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 VMACQ2NL98 169 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 DEFB133Q30KQ1 61 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 OOSP2Q86WS3 158 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 FBXO30Q8TB52 745 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 UTP15Q8TED0 518 aaKnown RBP13.08□□□□□ -0.32
PTPRF-202ENST00000372405 EXOSC8Q96B26 276 aaKnown RBP13.08□□□□□ -0.32
PTPRF-202ENST00000372405 IER2Q9BTL4 223 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 VCX3BQ9H321 246 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 CXorf36Q9H7Y0 433 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 TAS2R7Q9NYW3 318 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 UTS2RQ9UKP6 389 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 POMT2Q9UKY4 750 aa13.08□□□□□ -0.32
PTPRF-202ENST00000372405 GLOD5A6NK44 160 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 LMO7DNF2Z398 122 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 PGRMC2O15173 223 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 PDPK1O15530 556 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF888P0CJ79 500 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SMIM10L1P0DMW3 83 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 HOXA6P31267 233 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SWT1Q5T5J6 900 aaKnown RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 RNF44Q7L0R7 432 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 GALNT10Q86SR1 603 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 EPHX4Q8IUS5 362 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 ANKFN1Q8N957 763 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 MAL2Q969L2 176 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 NCLNQ969V3 563 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 GAL3ST3Q96A11 431 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 FAM162AQ96A26 154 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SMIM10Q96HG1 83 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 RNF145Q96MT1 663 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SLC29A1Q99808 456 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 ZFYVE21Q9BQ24 234 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 CHID1Q9BWS9 393 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 EPS8L2Q9H6S3 715 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 PCDHGB4Q9UN71 923 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 CABIN1Q9Y6J0 2220 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 DMDP11532 3685 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 H0YGG7 62 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 GMNNO75496 209 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 PIAS2O75928 621 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 PRKD3O94806 890 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 AIFM1O95831 613 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SERPINA1P01009 418 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 ETFAP13804 333 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 DRD2P14416 443 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 ST6GAL1P15907 406 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 CKMT2P17540 419 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 PPIBP23284 216 aaKnown RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 TSFMP43897 325 aaKnown RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 CCT8P50990 548 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 AFF3P51826 1226 aaKnown RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 CRYBA2P53672 197 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 ARF3P61204 181 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 HNRNPKP61978 463 aaKnown RBP eCLIP13.07□□□□□ -0.322e-6■■■□□ 17.3
PTPRF-202ENST00000372405 BTN3A2P78410 334 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 RELAQ04206 551 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 RGS1Q08116 209 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SRSF5Q13243 272 aaKnown RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 C18orf63Q68DL7 685 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SRFBP1Q8NEF9 429 aaKnown RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 KLHL6Q8WZ60 621 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 NECAB3Q96P71 396 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 CIB1Q99828 191 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 COQ10BQ9H8M1 238 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 FAM60AQ9NP50 221 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 SIRT3Q9NTG7 399 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 TMEM74BQ9NUR3 256 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 RAPGEFL1Q9UHV5 662 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 FBXW2Q9UKT8 454 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 DOLKQ9UPQ8 538 aa13.07□□□□□ -0.32
PTPRF-202ENST00000372405 MRPS2Q9Y399 296 aaKnown RBP13.07□□□□□ -0.32
PTPRF-202ENST00000372405 VPS13AQ96RL7 3174 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 ARID1BQ8NFD5 2236 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-202ENST00000372405 A0A1B0GVT2 93 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms