RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 PCDH7O60245 1069 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 KLF7O75840 302 aaPredicted RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 RSL1D1O76021 490 aaKnown RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 HEXBP07686 556 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 FAM58BPP0C7Q3 252 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 TPP2P29144 1249 aaPredicted RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 OTX2P32243 289 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 MDH1P40925 334 aaKnown RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 ARFIP1P53367 373 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 MAPK12P53778 367 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 GYS2P54840 703 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 RAB38P57729 211 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 RPL38P63173 70 aaKnown RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 RAE1P78406 368 aaKnown RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 KLC1Q07866 573 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 SPIN4Q56A73 249 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 BROXQ5VW32 411 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 C18orf63Q68DL7 685 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 GPR180Q86V85 440 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 KIRREL3Q8IZU9 778 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 ZCCHC7Q8N3Z6 543 aaKnown RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 CDC26Q8NHZ8 85 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 STARD8Q92502 1023 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 THOC1Q96FV9 657 aaKnown RBP13.11□□□□□ -0.31
TPM3-211ENST00000368531 CNTNAP3BQ96NU0 1288 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 CSF3RQ99062 836 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 SPSB2Q99619 263 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 CRB3Q9BUF7 120 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 EFHD1Q9BUP0 239 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 CNTNAP3Q9BZ76 1288 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 PFDN4Q9NQP4 134 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 RIC8BQ9NVN3 520 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 C1orf109Q9NX04 203 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 KCMF1Q9P0J7 381 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 C3orf18Q9UK00 162 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 SPACA6W5XKT8 324 aa13.11□□□□□ -0.31
TPM3-211ENST00000368531 IGLV3-12A0A075B6K2 115 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 MYOCOSA0A1B0GUC4 107 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 A0A1W2PR48 441 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 LSM1O15116 133 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 POLR3GO15318 223 aaPredicted RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 NKX2-8O15522 239 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 EFSO43281 561 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 PRKRAO75569 313 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 CREG1O75629 220 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 MYO1DO94832 1006 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 SCELO95171 688 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 FHP07954 510 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 CD63P08962 238 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 ANXA4P09525 319 aaPredicted RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 PRKAR1AP10644 381 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 TIA1P31483 386 aaKnown RBP eCLIP13.1□□□□□ -0.31
TPM3-211ENST00000368531 TSFMP43897 325 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 HNRNPFP52597 415 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 EMP2P54851 167 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 BTG2P78543 158 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 RFTN2Q52LD8 501 aaPredicted RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 XKR7Q5GH72 579 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 ATP1A1-AS1Q5TC04 95 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 VWA5B1Q5TIE3 1220 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 RNF165Q6ZSG1 346 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 HOMEZQ8IX15 550 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 KDF1Q8NAX2 398 aaPredicted RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 TMEM52Q8NDY8 209 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 OR2Y1Q8NGV0 311 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 PIWIL2Q8TC59 973 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 UCN3Q969E3 161 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 C7orf26Q96N11 449 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 TGIF2Q9GZN2 237 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 SLC26A1Q9H2B4 701 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 WDR54Q9H977 334 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 CLK4Q9HAZ1 481 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 LYRM4Q9HD34 91 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 PRTFDC1Q9NRG1 225 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 LYARQ9NX58 379 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 PHF11Q9UIL8 331 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 ADAM29Q9UKF5 820 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 NXT1Q9UKK6 140 aaKnown RBP13.1□□□□□ -0.31
TPM3-211ENST00000368531 ZMIZ1Q9ULJ6 1067 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 ATG4BQ9Y4P1 393 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 ASB4Q9Y574 426 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 CROCCQ5TZA2 2017 aa13.1□□□□□ -0.31
TPM3-211ENST00000368531 CACNA1AO00555 2505 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 GOLGA8QA0A0J9YX86 632 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 CDC14CA4D256 554 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 GOLGA8OA6NCC3 632 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 GLOD5A6NK44 160 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 WASHC1A8K0Z3 465 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 IDSB3KWA1 339 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 GOLGA8NF8WBI6 632 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 HDAC3O15379 428 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 UMODP07911 640 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 VIMP08670 466 aaKnown RBP13.09□□□□□ -0.31
TPM3-211ENST00000368531 JAK1P23458 1154 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 ALDH9A1P49189 494 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 TLE3Q04726 772 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 SF3A3Q12874 501 aaKnown RBP eCLIP13.09□□□□□ -0.31
TPM3-211ENST00000368531 IL10RAQ13651 578 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 TUBB8Q3ZCM7 444 aa13.09□□□□□ -0.31
TPM3-211ENST00000368531 ATP6AP1LQ52LC2 224 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms