RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CEACAM3P40198 252 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 FABP6P51161 128 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 HK2P52789 917 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ATP1B3P54709 279 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 BTN3A2P78410 334 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 GTF2BQ00403 316 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PMS2P3Q13401 168 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 GRB7Q14451 532 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TPSAB1Q15661 275 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CCDC92Q53HC0 331 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 INO80DQ53TQ3 878 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 PERM1Q5SV97 790 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 FIGNL1Q6PIW4 674 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 GLCCI1Q86VQ1 547 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PTRH1Q86Y79 214 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 EMC1Q8N766 993 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SPTSSAQ969W0 71 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CERS2Q96G23 380 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 C16orf58Q96GQ5 468 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SCGB3A2Q96PL1 93 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TRIB1Q96RU8 372 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 SLC25A51Q9H1U9 297 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 STARD5Q9NSY2 213 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PPP2R2CQ9Y2T4 447 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TMEM189-UBE2V1I3L0A0 370 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 K7EPI3 171 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 EIF3HO15372 352 aaKnown RBP eCLIP3.93□□□□□ -1.78
USH2A-202ENST00000366942 F7P08709 466 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 TACSTD2P09758 323 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 RHOXF2BP0C7M4 288 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ADRB3P13945 408 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 ALOX12P18054 663 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CD247P20963 164 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 P2RY2P41231 377 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 WNT3AP56704 352 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 DOC2AQ14183 400 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 NXNL2Q5VZ03 156 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 EEF1DP3Q658K8 133 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TANGO2Q6ICL3 276 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TYW3Q6IPR3 259 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 PAPD4Q6PIY7 484 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 EIF3MQ7L2H7 374 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 CXXC5Q7LFL8 322 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 ADIPOR2Q86V24 386 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 CNOT9Q92600 299 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 TSACCQ96A04 125 aaPredicted RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 CCDC74AQ96AQ1 378 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 THOC1Q96FV9 657 aaKnown RBP3.93□□□□□ -1.78
USH2A-202ENST00000366942 APIPQ96GX9 242 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 RHOXF2Q9BQY4 288 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TIMM29Q9BSF4 260 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 OBP2BQ9NPH6 170 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 C12orf4Q9NQ89 552 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 TET3O43151 1660 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 PLIN4Q96Q06 1357 aa3.93□□□□□ -1.78
USH2A-202ENST00000366942 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 KLRG2A4D1S0 409 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 IGLON5A6NGN9 336 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CCDC154A6NI56 674 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CRYM-AS1A6NIL9 109 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 LGALS16A8MUM7 142 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 HHLA1C9JL84 531 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ACOT8O14734 319 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ALOX12BO75342 701 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC43A1O75387 559 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 JRKO75564 520 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PPM1BO75688 479 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 RAD51DO75771 328 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KLHL2O95198 593 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 VAPBO95292 243 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CTDNEP1O95476 244 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SCG5P05408 212 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FURINP09958 794 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FAM58BPP0C7Q3 252 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC6A2P23975 617 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CCNCP24863 283 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZFP36L2P47974 494 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 PLA2G16P53816 162 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NTHL1P78549 312 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NPRL3Q12980 569 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZNF234Q14588 700 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 HFEQ30201 348 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CHRFAM7AQ494W8 412 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 VHLLQ6RSH7 139 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PTCHD4Q6ZW05 846 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 DPPA2Q7Z7J5 298 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PDZD3Q86UT5 571 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CPXM2Q8N436 756 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KLHL36Q8N4N3 616 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 OR2L5Q8NG80 312 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 OR11G2Q8NGC1 345 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TBC1D15Q8TC07 691 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TMEM158Q8WZ71 300 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KISS1RQ969F8 398 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 TXNDC15Q96J42 360 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC35G5Q96KT7 338 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NELFAQ9H3P2 528 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 EQTNQ9NQ60 294 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FBXO5Q9UKT4 447 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 MAFBQ9Y5Q3 323 aaPredicted RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms