RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZCWPW2A0A1B0GU75 182 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 F5H0A9 414 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 VILLO15195 856 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 TLL1O43897 1013 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 PRMT3O60678 531 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 PRKACBP22694 351 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 SMYD5Q6GMV2 418 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 PSRC1Q6PGN9 363 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 GPR135Q8IZ08 494 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 ADGRG5Q8IZF4 528 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 ZFP41Q8N8Y5 198 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 OR10T2Q8NGX3 314 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 HDHD5Q9BXW7 423 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 SAV1Q9H4B6 383 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 REEP4Q9H6H4 257 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 CENPMQ9NSP4 180 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 TAC3Q9UHF0 121 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 SCP2D1Q9UJQ7 156 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 FZD9O00144 591 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 IFNA21P01568 189 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 FAM110CQ1W6H9 321 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 CARD16Q5EG05 197 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 DLK2Q6UY11 383 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 FBXO22Q8NEZ5 403 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 TTLQ8NG68 377 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 ACOT12Q8WYK0 555 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 RTP4Q96DX8 246 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 TAPBPLQ9BX59 468 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 HNRNPFP52597 415 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 FAM189BP81408 668 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 ISCA2Q86U28 154 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 TP53INP2Q8IXH6 220 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 UBQLNLQ8IYU4 475 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 PSD4Q8NDX1 1056 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 OR2AP1Q8NGE2 309 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 OR5T3Q8NGG3 340 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 ZNF285Q96NJ3 590 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 SLC30A3Q99726 388 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 DHRS4Q9BTZ2 278 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 RNF208Q9H0X6 261 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 KAT7O95251 611 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 KCNJ8Q15842 424 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 VWA5B2Q8N398 1253 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 PAPD5Q8NDF8 572 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 FCAMRQ8WWV6 532 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 LRR1Q96L50 414 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 NELL2Q99435 816 aa18.81■□□□□ 0.6
CCDC88B-202ENST00000356786 BAZ2AQ9UIF9 1905 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 A0A1W2PQL4 384 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 NRIP1P48552 1158 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 ARSDP51689 593 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 ZNF101Q8IZC7 436 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 GATAD2BQ8WXI9 593 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 CRTAC1Q9NQ79 661 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 INTS6Q9UL03 887 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 UPK3BL1B0FP48 263 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 UPK3BL2E5RIL1 263 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 AGR2O95994 175 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 PDYNP01213 254 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 UQCRC1P31930 480 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 CCDC58Q4VC31 144 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 PAGE3Q5JUK9 113 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 IRAK1BP1Q5VVH5 260 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 CEACAM19Q7Z692 300 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 ZNF227Q86WZ6 799 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 HS3ST5Q8IZT8 346 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 MFSD2AQ8NA29 543 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 TMEM248Q9NWD8 314 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 URB1O60287 2271 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 A0A1W2PPK0 400 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 OR4D1Q15615 310 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 ABCA11PQ4W5N1 156 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 MSANTD1Q6ZTZ1 278 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 NOXA1Q86UR1 476 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 OR8S1Q8NH09 359 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 S100PBPQ96BU1 408 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 ACTR6Q9GZN1 396 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 SLA2Q9H6Q3 261 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 EDARQ9UNE0 448 aa18.8■□□□□ 0.6
CCDC88B-202ENST00000356786 KCNE1P15382 129 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 GCAP28676 217 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 CTNNB1P35222 781 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 GDI2P50395 445 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 PGDP52209 483 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 LRRC32Q14392 662 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 PROX2Q3B8N5 592 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 RGMBQ6NW40 437 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 DUS1LQ6P1R4 473 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 OR14C36Q8NHC7 312 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 MAFIPQ8WZ33 124 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 HSPA12BQ96MM6 686 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 MCHR1Q99705 422 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 MTG2Q9H4K7 406 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 VRTNQ9H8Y1 702 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 AGPAT4Q9NRZ5 378 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 NLGN3Q9NZ94 848 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 PCDHGA8Q9Y5G5 932 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 ARPC4-TTLL3A0A0A6YYG9 625 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 FAAHO00519 579 aa18.79■□□□□ 0.6
CCDC88B-202ENST00000356786 BEST1O76090 585 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms