RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IFI44LQ53G44 452 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 COX20Q5RI15 118 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 TRIQKQ629K1 86 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 ZNF770Q6IQ21 691 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 FAM122CQ6P4D5 195 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 KIAA1324Q6UXG2 1013 aaKnown RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 HSDL2Q6YN16 418 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 ZNF852Q6ZMS4 543 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 ZNF730Q6ZMV8 503 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 COMMD7Q86VX2 200 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 SYT12Q8IV01 421 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 GPR65Q8IYL9 337 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 C19orf18Q8NEA5 215 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 OR52P1PQ8NH57 321 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 CDC26Q8NHZ8 85 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 PIH1D2Q8WWB5 315 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 KLHL6Q8WZ60 621 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 AKAP1Q92667 903 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS39-202ENST00000348544 AP2M1Q96CW1 435 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 FCRL1Q96LA6 429 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 MAGEB10Q96LZ2 347 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 NELL2Q99435 816 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 KCNJ15Q99712 375 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 MAPKAP1Q9BPZ7 522 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 TMEM43Q9BTV4 400 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 MND1Q9BWT6 205 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 ANKRA2Q9H9E1 313 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 LIN7BQ9HAP6 207 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 RHCGQ9UBD6 479 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 COMMD3Q9UBI1 195 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 CDH10Q9Y6N8 788 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 DSPPQ9NZW4 1301 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 INMT-MINDY4F8WBC2 141 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 BET1O15155 118 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 HPGDSO60760 199 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 B3GAT3O94766 335 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 RECKO95980 971 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 RAF1P04049 648 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 MAPK1P28482 360 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 BMP8BP34820 402 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 XCR1P46094 333 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 RGS4P49798 205 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 CLCNKAP51800 687 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 MVDP53602 400 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 RPS25P62851 125 aaKnown RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 CYP4F8P98187 520 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 ZNF91Q05481 1191 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 SRSF11Q05519 484 aaKnown RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 CACNG1Q06432 222 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 RBBP4Q09028 425 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 BOP1Q14137 746 aaKnown RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 LRRC32Q14392 662 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 DUSP28Q4G0W2 176 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 MZT2BQ6NZ67 158 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 BRAT1Q6PJG6 821 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 CEACAM20Q6UY09 585 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 TRILQ7L0X0 811 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 BMP8AQ7Z5Y6 402 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 SERPINA9Q86WD7 417 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 TRIM69Q86WT6 500 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 SPATA2LQ8IUW3 424 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 FAM9CQ8IZT9 166 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 STK40Q8N2I9 435 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 BMPERQ8N8U9 685 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 FAM46DQ8NEK8 389 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 OR8J2Q8NGG1 315 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 SENP5Q96HI0 755 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 TCF25Q9BQ70 676 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 TMEM106CQ9BVX2 250 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 CINPQ9BW66 212 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 SLC7A5P2Q9GIP4 190 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 NMNAT1Q9HAN9 279 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 THSD1Q9NS62 852 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 FAM120CQ9NX05 1096 aaKnown RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 IL17CQ9P0M4 197 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 PCDHB1Q9Y5F3 818 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 POLR2AP24928 1970 aaKnown RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 A0A0A6YYJ9 748 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PRAMEF33A0A0G2JMD5 474 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 C2orf78A6NCI8 922 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ISM1B1AKI9 464 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 H3BUI4 141 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 TLR4O00206 839 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ORC5O43913 435 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MPZL2O60487 215 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PRAMEF10O60809 474 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 SOX14O95416 240 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 F2P00734 622 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 TPOP07202 933 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 HOXD4P09016 255 aaPredicted RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 PRKAR1AP10644 381 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ETFAP13804 333 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 ATF6P18850 670 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 IL32P24001 234 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 PTX3P26022 381 aaPredicted RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 HMGCLP35914 325 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 MAPKAPK2P49137 400 aa6.49□□□□□ -1.37
VPS39-202ENST00000348544 STK19P49842 368 aaPredicted RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 CRYBB1P53674 252 aaPredicted RBP6.49□□□□□ -1.37
VPS39-202ENST00000348544 SNRPGP62308 76 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms