RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PCDHGA10Q9Y5H3 936 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 CORINQ9Y5Q5 1042 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 STON1Q9Y6Q2 735 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 SLC31A1O15431 190 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 VEGFDO43915 354 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 JRKO75564 520 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 JUNBP17275 347 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PCMT1P22061 227 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PPIBP23284 216 aaKnown RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PTX3P26022 381 aaPredicted RBP9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PRKAG1P54619 331 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 DPTQ07507 201 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 ATP1A4Q13733 1029 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 DUSP7Q16829 419 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 IFI44LQ53G44 452 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TRIM40Q6P9F5 258 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 SNX29P2Q8IUI4 249 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 RAB2BQ8WUD1 216 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 DNASE1L2Q92874 299 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 MUL1Q969V5 352 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 C17orf62Q9BQA9 187 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 YIPF4Q9BSR8 244 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PLGRKTQ9HBL7 147 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 C1GALT1Q9NS00 363 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 GPR34Q9UPC5 381 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 CORO2BQ9UQ03 480 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 TPRKBQ9Y3C4 175 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 GPSM3Q9Y4H4 160 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 PCDHGB3Q9Y5G1 929 aa9.87□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF701M0R085 212 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 CD6P30203 668 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 GDI1P31150 447 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 MAPK9P45984 424 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 TMBIM6P55061 237 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 TOP3AQ13472 1001 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 EIF4HQ15056 248 aaKnown RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 TEAD4Q15561 434 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 CST6Q15828 149 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM52BQ4KMG9 183 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 SLC16A12Q6ZSM3 486 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 RD3Q7Z3Z2 195 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ENTHD1Q8IYW4 607 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 SLC15A4Q8N697 577 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 HORMAD2Q8N7B1 307 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 OR14C36Q8NHC7 312 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 NDNFQ8TB73 568 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 LZICQ8WZA0 190 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 NLNQ9BYT8 704 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ROGDIQ9GZN7 287 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 WDR26Q9H7D7 661 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 MYNNQ9NPC7 610 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 C17orf113A0A1B0GUU1 675 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 TRBC2A0A5B9 178 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 LINC01565O15544 149 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 TMPRSS11DO60235 418 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 TPST2O60704 377 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 FGL2Q14314 439 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 IRF4Q15306 451 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 KHDRBS2Q5VWX1 349 aaKnown RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 CAMKMTQ7Z624 323 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 FAM129CQ86XR2 697 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF513Q8N8E2 541 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 LINC01555Q8NAE3 123 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 FBXO15Q8NCQ5 510 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 INSM2Q96T92 566 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 AIF1LQ9BQI0 150 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 CTPS2Q9NRF8 586 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 DPP7Q9UHL4 492 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 CDH7Q9ULB5 785 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 NDRG4Q9ULP0 352 aaKnown RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 BRWD1Q9NSI6 2320 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 C5orf58C9J3I9 102 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 RGS10O43665 173 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 WBP4O75554 376 aaKnown RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 CCDC159P0C7I6 412 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 C21orf59P57076 290 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 NCS1P62166 190 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 SLC35A2P78381 396 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 GRSF1Q12849 480 aaKnown RBP eCLIP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF750Q32MQ0 723 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ZC3H12BQ5HYM0 836 aaKnown RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 AGBL4Q5VU57 503 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF765Q7L2R6 523 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 OR5K2Q8NHB8 316 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 FKBP10Q96AY3 582 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF300Q96RE9 604 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 GABARAPL1Q9H0R8 117 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 EHD1Q9H4M9 534 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 LMCD1Q9NZU5 365 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 RNF6Q9Y252 685 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 FAM32AQ9Y421 112 aaKnown RBP9.86□□□□□ -0.83
LIMA1-201ENST00000341247 PCDHGA6Q9Y5G7 932 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 HEATR5BQ9P2D3 2071 aa9.86□□□□□ -0.83
LIMA1-201ENST00000341247 ERAL1O75616 437 aaKnown RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 C8orf89P0DMQ9 161 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 C21orf58P58505 322 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 GABARAPL2P60520 117 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 DSTNP60981 165 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM31Q5JXX7 168 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 DEPDC1Q5TB30 811 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms