RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZNF81P51508 661 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 GPR68Q15743 365 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 RNASE12Q5GAN4 147 aaKnown RBP12.91□□□□□ -0.34
SKA3-201ENST00000298260 USP30Q70CQ3 517 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 PRSS42Q7Z5A4 293 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 ZNF683Q8IZ20 524 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 OR4N4Q8N0Y3 316 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 C8orf48Q96LL4 319 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 LINC00052Q96N35 136 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 FERD3LQ96RJ6 166 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 PTPN18Q99952 460 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 DOHHQ9BU89 302 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 ACSL6Q9UKU0 697 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 PTCH2Q9Y6C5 1203 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 RPS10-NUDT3A0A1W2PQS6 291 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 SIGLEC5O15389 551 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 CHP2O43745 196 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 SCN2BO60939 215 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 B3GAT3O94766 335 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 HOXD4P09016 255 aaPredicted RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 C1SP09871 688 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 RHOQP17081 205 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 CD79BP40259 229 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 CLDN20P56880 219 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 SIGLEC14Q08ET2 396 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 RBBP4Q09028 425 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 ATAT1Q5SQI0 421 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 KIAA1841Q6NSI8 718 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 SYT12Q8IV01 421 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 ZNF655Q8N720 491 aaPredicted RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 EID2BQ96D98 161 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 SENP5Q96HI0 755 aaPredicted RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 SORBS1Q9BX66 1292 aaKnown RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 SLC28A3Q9HAS3 691 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 PAK6Q9NQU5 681 aaPredicted RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 SEC14L4Q9UDX3 406 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 RALGAPA2Q2PPJ7 1873 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 ALPK3Q96L96 1907 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 TP53BP1Q12888 1972 aaPredicted RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 KPNA5O15131 536 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 SLC25A14O95258 325 aaPredicted RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 POMCP01189 267 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 INPP1P49441 399 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 TTPAP49638 278 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 CLCNKAP51800 687 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 PTPN5P54829 565 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 TBX4P57082 545 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 CRTC2Q53ET0 693 aaPredicted RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 LDLRAD1Q5T700 205 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 MEX3DQ86XN8 651 aaKnown RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 GHDCQ8N2G8 530 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 SYNPOQ8N3V7 929 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 OR4C15Q8NGM1 316 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 USP7Q93009 1102 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 MSLNLQ96KJ4 702 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 MTERF1Q99551 399 aaKnown RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 PKP4Q99569 1192 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 MAPRE3Q9UPY8 281 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 EXO1Q9UQ84 846 aaKnown RBP12.9□□□□□ -0.34
SKA3-201ENST00000298260 DHRS7Q9Y394 339 aa12.9□□□□□ -0.34
SKA3-201ENST00000298260 DNAJC25-GNG10A0A024R161 153 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 TMEM88BA6NKF7 163 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PRAMEF4O60810 478 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 RAF1P04049 648 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PRKAR1AP10644 381 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 LPOP22079 712 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 ETV5P41161 510 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 ETV1P50549 477 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 CTAG1AP78358 180 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 BCL2L1Q07817 233 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 CRYZQ08257 329 aaKnown RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 KLHL22Q53GT1 634 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PRAMEF9Q5VWM5 478 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 LAS2Q8IYD9 372 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 ADGRG2Q8IZP9 1017 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PGBD3Q8N328 593 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 TCEANCQ8N8B7 351 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 PPTC7Q8NI37 304 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 C9orf43Q8TAL5 461 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 GATAD2BQ8WXI9 593 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 TM9SF4Q92544 642 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 GPR137Q96N19 417 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 FAM105AQ9NUU6 356 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 TMEM248Q9NWD8 314 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 NDUFB11Q9NX14 153 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 WDR90Q96KV7 1748 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 MYO10Q9HD67 2058 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 SHISA3A0PJX4 238 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 GSAPA4D1B5 854 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 GABRR3A8MPY1 467 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 H3BN98 237 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 ORC5O43913 435 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 LZTS3O60299 673 aaPredicted RBP12.89□□□□□ -0.35
SKA3-201ENST00000298260 ALPIP09923 528 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 ITPKAP23677 461 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 ZNF628Q5EBL2 1059 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 XKR4Q5GH76 650 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 GARNL3Q5VVW2 1013 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 NOXRED1Q6NXP6 359 aa12.89□□□□□ -0.35
SKA3-201ENST00000298260 IL20RBQ6UXL0 311 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms