RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 KIAA1024LP59773 190 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 TRA2BP62995 288 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 ABATP80404 500 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 IL1RL1Q01638 556 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 GRSF1Q12849 480 aaKnown RBP eCLIP12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 PMS2P3Q13401 168 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 LAPTM4AQ15012 233 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 MEP1AQ16819 746 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 TMEM35AQ53FP2 167 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 IFI44LQ53G44 452 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 OR4C11Q6IEV9 310 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 CLVS1Q8IUQ0 354 aaPredicted RBP12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 PLD3Q8IV08 490 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 TBC1D19Q8N5T2 526 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 ZNF764Q96H86 408 aaPredicted RBP12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 OR2M4Q96R27 311 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 RIBC2Q9H4K1 309 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 CXorf36Q9H7Y0 433 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 DDX31Q9H8H2 851 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 FGF22Q9HCT0 170 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 LTB4R2Q9NPC1 389 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 THUMPD1Q9NXG2 353 aaKnown RBP12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 PCDHGB3Q9Y5G1 929 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 COLEC10Q9Y6Z7 277 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 MYO10Q9HD67 2058 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 REV3LO60673 3130 aa12.32□□□□□ -0.44
SPTLC1-201ENST00000262554 ZNF701M0R085 212 aaPredicted RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ADAMDEC1O15204 470 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 B4GAT1O43505 415 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 JRKO75564 520 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 TRMUO75648 421 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 OPN1SWP03999 348 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ARAFP10398 606 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 IL7RP16871 459 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ITGA2P17301 1181 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 DRD1P21728 446 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 GABARAPL2P60520 117 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 DSTNP60981 165 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ISL1P61371 349 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 EEF1A2Q05639 463 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 CD47Q08722 323 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 SKIV2LQ15477 1246 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 CTU2Q2VPK5 515 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 IQCCQ4KMZ1 466 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 CRB2Q5IJ48 1285 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 UBE3DQ7Z6J8 389 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ATG16L2Q8NAA4 619 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 CREB3L4Q8TEY5 395 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 NEURL3Q96EH8 262 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 NECTIN4Q96NY8 510 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ZNF347Q96SE7 839 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 TUBA1CQ9BQE3 449 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 EPS8L2Q9H6S3 715 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 CXorf21Q9HAI6 301 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 NEUROD4Q9HD90 331 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 KRT84Q9NSB2 600 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 TMEM184CQ9NVA4 438 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 PIAS3Q9Y6X2 628 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 LRIT2A6NDA9 550 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 POM121BA6NF01 834 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 TMEM229AB2RXF0 380 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 M0QX08 132 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 SCAMP1O15126 338 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 TMPRSS11DO60235 418 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 GSTM2P28161 218 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 RRM2P31350 389 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 POLR2IP36954 125 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 SSR2P43308 183 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 PLA2G16P53816 162 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 MRPS21P82921 87 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 IL5RAQ01344 420 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 KEAP1Q14145 624 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 RAB39AQ14964 217 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 NEDD8Q15843 81 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 FAM180BQ6P0A1 224 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ERI1Q8IV48 349 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 DENND6BQ8NEG7 585 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 EXOSC8Q96B26 276 aaKnown RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 TAMM41Q96BW9 452 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ISOC1Q96CN7 298 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ZBED6CLQ96FA7 236 aaPredicted RBP12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 ABCG4Q9H172 646 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 KIR3DX1Q9H7L2 352 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 HSPE1-MOB4S4R3N1 261 aa12.31□□□□□ -0.44
SPTLC1-201ENST00000262554 A0A0A6YYD5 115 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 PRICKLE3O43900 615 aaPredicted RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 SH3BP5O60239 455 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 CPNE6O95741 557 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 DRD2P14416 443 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 CMPK1P30085 196 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 BCL6P41182 706 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 FRKP42685 505 aaPredicted RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 PCBP4P57723 403 aaKnown RBP12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 CLDN2P57739 230 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 HSPB3Q12988 150 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 RAPSNQ13702 412 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 NFATC4Q14934 902 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 ZIC1Q15915 447 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 SPDYE7PQ495Y7 208 aa12.3□□□□□ -0.44
SPTLC1-201ENST00000262554 SAXO2Q658L1 398 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 178.2 ms