RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 HIST1H1TP22492 207 aaPredicted RBP15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 HMOX2P30519 316 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 SSR2P43308 183 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 TSFMP43897 325 aaKnown RBP15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 KRT6CP48668 564 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 RAP1GDS1P52306 607 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 EMP2P54851 167 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 FOXA1P55317 472 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 RHDQ02161 417 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 AP5B1Q2VPB7 878 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 MINDY4Q4G0A6 757 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 AGBL2Q5U5Z8 902 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 OR4C11Q6IEV9 310 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 ZCCHC23Q6ZST2 131 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 NUDCD3Q8IVD9 361 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 ACOT4Q8N9L9 421 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 OR6Y1Q8NGX8 325 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 SREK1Q8WXA9 508 aaKnown RBP15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 TTC9Q92623 222 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 EXTL1Q92935 676 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 ARL8AQ96BM9 186 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 PKNOX2Q96KN3 472 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 IP6K3Q96PC2 410 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 SERPINI1Q99574 410 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 MESP1Q9BRJ9 268 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 SORBS1Q9BX66 1292 aaKnown RBP15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 ZNF717Q9BY31 904 aaPredicted RBP15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 SHCBP1LQ9BZQ2 653 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 VN1R1Q9GZP7 353 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 BRF2Q9HAW0 419 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 TNFRSF12AQ9NP84 129 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 LANCL2Q9NS86 450 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 MAN2B2Q9Y2E5 1009 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 TIMM22Q9Y584 194 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 KCNMB2Q9Y691 235 aa15.61■□□□□ 0.09
CCDC28A-202ENST00000611852 TMEM120BA0PK00 339 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 OR2W5A6NFC9 320 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 SOCS6O14544 535 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 NPHS1O60500 1241 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 ULK1O75385 1050 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 CDC123O75794 336 aaPredicted RBP15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 SEMA3DO95025 777 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 HEXBP07686 556 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 ATP1A4Q13733 1029 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 MFSD4BQ5TF39 518 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 BORAQ6PGQ7 559 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 KIRREL2Q6UWL6 708 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 MED25Q71SY5 747 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 HBEGFQ99075 208 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 SH3GL2Q99962 352 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 P4HTMQ9NXG6 502 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 DAPP1Q9UN19 280 aa15.6■□□□□ 0.09
CCDC28A-202ENST00000611852 NUP210LQ5VU65 1888 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 NBEAQ8NFP9 2946 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 WDR91A4D1P6 747 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 FAM227AF5H4B4 570 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 BIRC5O15392 142 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 CHRNGP07510 517 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 CYC1P08574 325 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 JAK1P23458 1154 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 BSGP35613 385 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 HTR6P50406 440 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 SLC18A1P54219 525 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 LIM2P55344 173 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 LINC00303Q3SY05 128 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 CUZD1Q86UP6 607 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 ANKRD42Q8N9B4 389 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 APOBEC4Q8WW27 367 aaKnown RBP15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 MRPL1Q9BYD6 325 aaKnown RBP15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 KCMF1Q9P0J7 381 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 SCN2AQ99250 2005 aa15.59■□□□□ 0.09
CCDC28A-202ENST00000611852 ARGFXA6NJG6 315 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 PSMD12O00232 456 aaPredicted RBP15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 PEX12O00623 359 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 B4GALT2O60909 372 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ALOX12BO75342 701 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 SASH3O75995 380 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 HSD3B1P14060 373 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 HSD3B2P26439 372 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ARRB2P32121 409 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 RAB38P57729 211 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 RHAGQ02094 409 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ZNF33BQ06732 778 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 GALNT1Q10472 559 aaPredicted RBP15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 CSTF3Q12996 717 aaKnown RBP15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 RCN2Q14257 317 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ABRAXAS2Q15018 415 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 TUBB8Q3ZCM7 444 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ARL13AQ5H913 290 aaPredicted RBP15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 FAAH2Q6GMR7 532 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 TMEM205Q6UW68 189 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 APLFQ8IW19 511 aaPredicted RBP15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ZCCHC7Q8N3Z6 543 aaKnown RBP15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 OR11G2Q8NGC1 345 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 C8orf44Q96CB5 159 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 ATP6V1G3Q96LB4 118 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 MAPKAP1Q9BPZ7 522 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 DDX31Q9H8H2 851 aaKnown RBP15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 LYRM4Q9HD34 91 aa15.58■□□□□ 0.09
CCDC28A-202ENST00000611852 MLXIPLQ9NP71 852 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms