RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ELOA3Q8NG57 546 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 OR52E4Q8NGH9 312 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SETD6Q8TBK2 473 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FAM110BQ8TC76 370 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 MAGEE2Q8TD90 523 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 FAR1Q8WVX9 515 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 CAPSLQ8WWF8 208 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FCGR1BQ92637 280 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PROX1Q92786 737 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 LRRC58Q96CX6 371 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 CCDC120Q96HB5 630 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 NSMCE2Q96MF7 247 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ZNF300Q96RE9 604 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 NODALQ96S42 347 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 MBOAT4Q96T53 435 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 AGAP2Q99490 1192 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 RBM4BQ9BQ04 359 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLC39A3Q9BRY0 314 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 MLPHQ9BV36 600 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 RBM4Q9BWF3 364 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 OSBPL10Q9BXB5 764 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 DGCR6LQ9BY27 220 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PLA2G12AQ9BZM1 189 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 BRINP2Q9C0B6 783 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 B3GNT4Q9C0J1 378 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLIRPQ9GZT3 109 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 RAB6CQ9H0N0 254 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 RSPH9Q9H1X1 276 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 DSN1Q9H410 356 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ASB7Q9H672 318 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLA2Q9H6Q3 261 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 MAGIXQ9H6Y5 334 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 KAT8Q9H7Z6 458 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 MARCH7Q9H992 704 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SIAEQ9HAT2 523 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PLEKHA5Q9HAU0 1116 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 NEK6Q9HC98 313 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 NEUROD4Q9HD90 331 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ACSS2Q9NR19 701 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SDR39U1Q9NRG7 319 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 SACM1LQ9NTJ5 587 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 COMMD8Q9NX08 183 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 CMTM6Q9NX76 183 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLC39A1Q9NY26 324 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ZDHHC3Q9NYG2 299 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.99□□□□□ -1.77
LIG3-211ENST00000588713 LEF1Q9UJU2 399 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 OSGIN1Q9UJX0 560 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 C3orf18Q9UK00 162 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FBXO10Q9UK96 956 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PILRAQ9UKJ1 303 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 INTS6Q9UL03 887 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 FZD4Q9ULV1 537 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 RUVBL2Q9Y230 463 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 AP3M1Q9Y2T2 418 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 WBP11Q9Y2W2 641 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 ANGPTL3Q9Y5C1 460 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PCDHGA11Q9Y5H2 935 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ST14Q9Y5Y6 855 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 DGKBQ9Y6T7 804 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 HSPE1-MOB4S4R3N1 261 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 TDRD6O60522 2096 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 MEGF8Q7Z7M0 2845 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 NBEAL2Q6ZNJ1 2754 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 A0A1W2PP18 115 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 FAM92AA1XBS5 289 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 PIPSLA2A3N6 862 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 ARGFXA6NJG6 315 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 A6NL46 340 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 NOTOA8MTQ0 251 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 FAM25AB3EWG3 89 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 FAM25CB3EWG5 89 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 FAM25GB3EWG6 89 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 EIF3FO00303 357 aaPredicted RBP3.98□□□□□ -1.77
LIG3-211ENST00000588713 UPK1AO00322 258 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 IFRD1O00458 451 aaPredicted RBP3.98□□□□□ -1.77
LIG3-211ENST00000588713 SLC16A6O15403 523 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 GUCY1B2O75343 617 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 GRAP2O75791 330 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 ALX3O95076 343 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 SNX4O95219 450 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 KCNH1O95259 989 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 CLIC3O95833 236 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 KRT8P05787 483 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 FGF4P08620 206 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 PRR35P0CG20 571 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 NME1P15531 152 aaKnown RBP3.98□□□□□ -1.77
LIG3-211ENST00000588713 IL7RP16871 459 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 LBPP18428 481 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 IL1RNP18510 177 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 NFKB1P19838 968 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 ENDOUP21128 410 aaKnown RBP3.98□□□□□ -1.77
LIG3-211ENST00000588713 CES1P23141 567 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 HRH2P25021 359 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 CXCR2P25025 360 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 ACVR2AP27037 513 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 NMBRP28336 390 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 RYKP34925 604 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 RCVRNP35243 200 aa3.98□□□□□ -1.77
LIG3-211ENST00000588713 NUDT1P36639 197 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms