RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	FJX1	Q86VR8	437 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	SPNS2	Q8IVW8	549 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	GPALPP1	Q8IXQ4	340 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	TMEM132C	Q8N3T6	1108 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	DAZL	Q92904	295 aa	Known RBP	13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	REPS1	Q96D71	796 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	UBXN10	Q96LJ8	280 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	TBCD	Q9BTW9	1192 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	CD244	Q9BZW8	370 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	CDCP1	Q9H5V8	836 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	CAB39L	Q9H9S4	337 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	LYRM4	Q9HD34	91 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	ADAP2	Q9NPF8	381 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	PTBP2	Q9UKA9	531 aa	Known RBP	13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	ACOT9	Q9Y305	439 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	ANGPTL3	Q9Y5C1	460 aa		13.19	□□□□□ -0.3
TPM1-223	ENST00000560445	UTP20	O75691	2785 aa	Known RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	ASPDH	A6ND91	283 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	SUPT3H	B4E1H0	165 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	KLRC4-KLRK1	H3BQV0	150 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	CCNT2	O60583	730 aa	Known RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	SUPT3H	O75486	399 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	MYO1D	O94832	1006 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	ESRRA	P11474	423 aa	Predicted RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	COX7A2	P14406	83 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	EPB42	P16452	691 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	ZNF24	P17028	368 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	TFEB	P19484	476 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	MAOA	P21397	527 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	PPP2R1B	P30154	601 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	CASP2	P42575	452 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	GDF5	P43026	501 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	HLCS	P50747	726 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	SMS	P52788	366 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	PLA2G16	P53816	162 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	KCNK10	P57789	538 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	MLF1	P58340	268 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	SNRPN	P63162	240 aa	Known RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	BIK	Q13323	160 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	ELAVL1	Q15717	326 aa	Known RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	KBTBD12	Q3ZCT8	623 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	C1QL3	Q5VWW1	255 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	METTL2B	Q6P1Q9	378 aa	Known RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	MED27	Q6P2C8	311 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	BNC2	Q6ZN30	1099 aa	Predicted RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	SCUBE1	Q8IWY4	988 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	CNPY4	Q8N129	248 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	ARMC10	Q8N2F6	343 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	GHDC	Q8N2G8	530 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	TMEM156	Q8N614	296 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	MNS1	Q8NEH6	495 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	RHEBL1	Q8TAI7	183 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	FBXO25	Q8TCJ0	367 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	UBTD2	Q8WUN7	234 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	GPR137	Q96N19	417 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	TMEM79	Q9BSE2	394 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	KLHL31	Q9H511	634 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	TRIM45	Q9H8W5	580 aa	Predicted RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	KLHL1	Q9NR64	748 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	SMYD2	Q9NRG4	433 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	MS4A12	Q9NXJ0	267 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	ENTPD4	Q9Y227	616 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	CLCA3P	Q9Y6N3	262 aa		13.18	□□□□□ -0.3
TPM1-223	ENST00000560445	TRBV11-1	A0A0K0K1C0	115 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	OR2W5	A6NFC9	320 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	CXorf49	A8MYA2	514 aa	Predicted RBP	13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	FAM227A	F5H4B4	570 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445		K7EPI3	171 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	CCL21	O00585	134 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	HNRNPR	O43390	633 aa	Known RBP	13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	NME2P1	O60361	137 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	SLC19A2	O60779	497 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	ZFAND5	O76080	213 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	CLDN1	O95832	211 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	RNF224	P0DH78	156 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	NME2	P22392	152 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	TPP2	P29144	1249 aa	Predicted RBP	13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	HNRNPH1	P31943	449 aa	Known RBP	13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	CA7	P43166	264 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	ARFIP1	P53367	373 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	STX4	Q12846	297 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	CHIT1	Q13231	466 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	ART3	Q13508	389 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	DOC2A	Q14183	400 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	MAPKAPK3	Q16644	382 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	WHAMMP3	Q1A5X7	153 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	AP5B1	Q2VPB7	878 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	ABHD17C	Q6PCB6	329 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	ZNF808	Q8N4W9	903 aa	Predicted RBP	13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	OR14A16	Q8NHC5	309 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	FBF1	Q8TES7	1133 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	EXT2	Q93063	718 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	CMTM7	Q96FZ5	175 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	ALG9	Q9H6U8	611 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	CHST11	Q9NPF2	352 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	COPS7A	Q9UBW8	275 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	TMCO1	Q9UM00	188 aa		13.17	□□□□□ -0.3
TPM1-223	ENST00000560445	DAPP1	Q9UN19	280 aa		13.17	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms