RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TGM3Q08188 693 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 IL10RAQ13651 578 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 OR4C11Q6IEV9 310 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 TRIM46Q7Z4K8 759 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 CLYBLQ8N0X4 340 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 METTL4Q8N3J2 472 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 ACOT4Q8N9L9 421 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 SRFBP1Q8NEF9 429 aaKnown RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 RAB3IL1Q8TBN0 382 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 TWIST2Q8WVJ9 160 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 STARD8Q92502 1023 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 ZNF75CPQ92670 426 aaPredicted RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 PEX11GQ96HA9 241 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 SLC45A3Q96JT2 553 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 YIPF2Q9BWQ6 316 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 GPR87Q9BY21 358 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 MANSC1Q9H8J5 431 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 WDR54Q9H977 334 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 COPS7BQ9H9Q2 264 aaPredicted RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 MKKSQ9NPJ1 570 aaPredicted RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 INTS9Q9NV88 658 aaKnown RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 ZNF282Q9UDV7 671 aaPredicted RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 PTRH2Q9Y3E5 179 aaKnown RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 RAP2CQ9Y3L5 183 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 A0A0A6YYD5 115 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 B3GALT2O43825 422 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 TMPRSS11DO60235 418 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 JUNP05412 331 aaKnown RBP20.56■□□□□ 0.88
SNX1-210ENST00000560260 ZGLP1P0C6A0 271 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 RPS15P62841 145 aaKnown RBP20.56■□□□□ 0.88
SNX1-210ENST00000560260 HSP90B2PQ58FF3 399 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 NIPAL1Q6NVV3 410 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 RNF165Q6ZSG1 346 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 LAPTM4BQ86VI4 370 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 GBP7Q8N8V2 638 aaPredicted RBP20.56■□□□□ 0.88
SNX1-210ENST00000560260 OR2T11Q8NH01 316 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 APIPQ96GX9 242 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 CSF3RQ99062 836 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 MESP1Q9BRJ9 268 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 TGIF2Q9GZN2 237 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 LANCL2Q9NS86 450 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 PNPOQ9NVS9 261 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 VPS29Q9UBQ0 182 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 KCND3Q9UK17 655 aa20.56■□□□□ 0.88
SNX1-210ENST00000560260 SRRM3A6NNA2 597 aaPredicted RBP20.55■□□□□ 0.88
SNX1-210ENST00000560260 KLF11O14901 512 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 PIP5K1BO14986 540 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 BMP10O95393 424 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 GBAP04062 536 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 ARFIP1P53367 373 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 LIM2P55344 173 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 SKP1P63208 163 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 KLC1Q07866 573 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 ERV3-1Q14264 604 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 AP5B1Q2VPB7 878 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 ATP1A1-AS1Q5TC04 95 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 LRRC69Q6ZNQ3 347 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 COMMD6Q7Z4G1 85 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 TRIM42Q8IWZ5 723 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 C1orf52Q8N6N3 182 aaKnown RBP20.55■□□□□ 0.88
SNX1-210ENST00000560260 TMEM52Q8NDY8 209 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 OR2Y1Q8NGV0 311 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 MIEF2Q96C03 454 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 MAPKAP1Q9BPZ7 522 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 CENPKQ9BS16 269 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 NPLQ9BXD5 320 aaPredicted RBP20.55■□□□□ 0.88
SNX1-210ENST00000560260 DDX31Q9H8H2 851 aaKnown RBP20.55■□□□□ 0.88
SNX1-210ENST00000560260 CPNE5Q9HCH3 593 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 C14orf105Q9NVL8 296 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 KCMF1Q9P0J7 381 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 DAPP1Q9UN19 280 aa20.55■□□□□ 0.88
SNX1-210ENST00000560260 A0A088AWK7 358 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 OR2W5A6NFC9 320 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 FAM227AF5H4B4 570 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 SKAP2O75563 359 aaPredicted RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 CREG1O75629 220 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 FURINP09958 794 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 ZNF10P21506 573 aaPredicted RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 TPP2P29144 1249 aaPredicted RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 TSFMP43897 325 aaKnown RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 HNRNPFP52597 415 aaKnown RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 HNRNPH2P55795 449 aaKnown RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 RAE1P78406 368 aaKnown RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 OCA2Q04671 838 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 XKR7Q5GH72 579 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 ATG16L1Q676U5 607 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 MRM1Q6IN84 353 aaKnown RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 Q6ZSR9 355 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 NUDT13Q86X67 352 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 ZCCHC7Q8N3Z6 543 aaKnown RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 CHTF18Q8WVB6 975 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 FAM117AQ9C073 453 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 ROGDIQ9GZN7 287 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 ILKAPQ9H0C8 392 aaPredicted RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 CLK4Q9HAZ1 481 aaKnown RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 THAP1Q9NVV9 213 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.54■□□□□ 0.88
SNX1-210ENST00000560260 USP24Q9UPU5 2620 aa20.54■□□□□ 0.88
SNX1-210ENST00000560260 NKX2-8O15522 239 aa20.53■□□□□ 0.88
SNX1-210ENST00000560260 CDC123O75794 336 aaPredicted RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms