RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TAGAPQ8N103 731 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 Q8N9G6 341 aaPredicted RBP15.58■□□□□ 0.09
SHMT2-231ENST00000557433 GRPEL2Q8TAA5 225 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 FIBINQ8TAL6 211 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.58■□□□□ 0.09
SHMT2-231ENST00000557433 KIAA1143Q96AT1 154 aaPredicted RBP15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ST6GAL2Q96JF0 529 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 PHOX2BQ99453 314 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 NDEL1Q9GZM8 345 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 SLC22A4Q9H015 551 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 SLA2Q9H6Q3 261 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 SYNDIG1Q9H7V2 258 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 HHATLQ9HCP6 504 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ERVK13-1Q9NX77 482 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 STOX2Q9P2F5 926 aaPredicted RBP15.58■□□□□ 0.09
SHMT2-231ENST00000557433 GULP1Q9UBP9 304 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 MGAT4BQ9UQ53 548 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 SNX8Q9Y5X2 465 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 V9GYH0 126 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ARHGEF33A8MVX0 844 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 A8MX80 341 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 FAM25AB3EWG3 89 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 FAM25CB3EWG5 89 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 FAM25GB3EWG6 89 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 PCDH17O14917 1159 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 HOXC11O43248 304 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-231ENST00000557433 SEC14L5O43304 696 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 MFN2O95140 757 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 OLFM2O95897 454 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 EFEMP2O95967 443 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 OSMP13725 252 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 LHCGRP22888 699 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 CTGFP29279 349 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 CNR2P34972 360 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 OR1E2P47887 323 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 CRISP3P54108 245 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 POLR2LP62875 67 aaKnown RBP15.58■□□□□ 0.08
SHMT2-231ENST00000557433 PSPHP78330 225 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 BNC1Q01954 994 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 MLLT11Q13015 90 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-231ENST00000557433 ILKQ13418 452 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 C1DQ13901 141 aaKnown RBP15.58■□□□□ 0.08
SHMT2-231ENST00000557433 SPHARQ15513 63 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 COX20Q5RI15 118 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 ZNF770Q6IQ21 691 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-231ENST00000557433 KLHL17Q6TDP4 642 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 PROKR2Q8NFJ6 384 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 HUS1BQ8NHY5 278 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 TRIM63Q969Q1 353 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 DEPDC7Q96QD5 511 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 SRRQ9GZT4 340 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 MYNNQ9NPC7 610 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 C14orf119Q9NWQ9 140 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 NDUFB11Q9NX14 153 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 TMPRSS11EQ9UL52 423 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 SSR3Q9UNL2 185 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 CMAHPQ9Y471 501 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 KCNE2Q9Y6J6 123 aa15.58■□□□□ 0.08
SHMT2-231ENST00000557433 HYKKA2RU49 373 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 PRAMEF25A6NGN4 478 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 TLR4O00206 839 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 SEMA3DO95025 777 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 ETHE1O95571 254 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 IL1AP01583 271 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 LMAN2Q12907 356 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 NAE1Q13564 534 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 RGMBQ6NW40 437 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 CLDN22Q8N7P3 220 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 GDPD1Q8N9F7 314 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 ADAMTS19Q8TE59 1207 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 ASB15Q8WXK1 588 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 GTPBP3Q969Y2 492 aaKnown RBP15.57■□□□□ 0.08
SHMT2-231ENST00000557433 PPCDCQ96CD2 204 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 WDR34Q96EX3 536 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 CNPPD1Q9BV87 410 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 ROGDIQ9GZN7 287 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 NMNAT1Q9HAN9 279 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-231ENST00000557433 PRDM8Q9NQV8 689 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 ITM2CQ9NQX7 267 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 TMCC3Q9ULS5 477 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 SNX7Q9UNH6 387 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 KIAA1671Q9BY89 1806 aa15.57■□□□□ 0.08
SHMT2-231ENST00000557433 TRBC2A0A5B9 178 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 UPK3BL1B0FP48 263 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 NT5C1B-RDH14C9J2C7 533 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 UPK3BL2E5RIL1 263 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 RGS5O15539 181 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 POP4O95707 220 aaKnown RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 FURINP09958 794 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 IL7P13232 177 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 ZNF8P17098 575 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 TNFRSF1BP20333 461 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 CHI3L1P36222 383 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 RPS19P39019 145 aaKnown RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 RFX2P48378 723 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 XKRXQ6PP77 449 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 IKBIPQ70UQ0 350 aa15.56■□□□□ 0.08
SHMT2-231ENST00000557433 TMEM173Q86WV6 379 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.56■□□□□ 0.08
SHMT2-231ENST00000557433 LAS2Q8IYD9 372 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms