RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 ITGA10O75578 1167 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 RNASEH2AO75792 299 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 BCAS2O75934 225 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 C1QL1O75973 258 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 KRT36O76013 467 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 BAG2O95816 211 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 RPN2P04844 631 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 IL6P05231 212 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ALDOCP09972 364 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 PRPS2P11908 318 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ANPEPP15144 967 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 POU3F3P20264 500 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 DRD1P21728 446 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 PRDX3P30048 256 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 NTSR1P30989 418 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 VHLP40337 213 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 HNF4AP41235 474 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 CASP2P42575 452 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 SLC6A12P48065 614 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 PTDSS1P48651 473 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 POLR2JP52435 117 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 CTSCP53634 463 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 DIO3P55073 304 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ELLP55199 621 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 RPS21P63220 83 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 SIM1P81133 766 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 IRF8Q02556 426 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 GRSF1Q12849 480 aaKnown RBP eCLIP4.29□□□□□ -1.72
SRP54-212ENST00000556992 FOXF2Q12947 444 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 TRAF3Q13114 568 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 SQSTM1Q13501 440 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 CEACAM7Q14002 265 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 TRIM25Q14258 630 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 ABRAXAS2Q15018 415 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 RCN1Q15293 331 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 CST6Q15828 149 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 HIST2H2ACQ16777 129 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 IMPG1Q17R60 797 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 C21orf62-AS1Q17RA5 79 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 C18orf21Q32NC0 220 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 PTCHD3Q3KNS1 767 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 GGTA1PQ4G0N0 100 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 SGO1Q5FBB7 561 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 FBXO48Q5FWF7 155 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 PIGGQ5H8A4 983 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 IL23RQ5VWK5 629 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 EGFLAMQ63HQ2 1017 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ZNF776Q68DI1 518 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 HIST2H2AA3Q6FI13 130 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 RAET1GQ6H3X3 334 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ZFP1Q6P2D0 407 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 NEK5Q6P3R8 708 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 AGTRAPQ6RW13 159 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 SCIMPQ6UWF3 145 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ESPNLQ6ZVH7 1005 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 KBTBD6Q86V97 674 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 AMZ2Q86W34 360 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 THOC6Q86W42 341 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 RALGPS2Q86X27 583 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 HPS6Q86YV9 775 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 TMEM126BQ8IUX1 230 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 FUNDC1Q8IVP5 155 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 KLHDC8AQ8IYD2 350 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ZZZ3Q8IYH5 903 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 TDHQ8IZJ6 230 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 SFRP1Q8N474 314 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 HDDC3Q8N4P3 179 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 L3MBTL4Q8NA19 623 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 FNDC5Q8NAU1 212 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 OR2T3Q8NH03 318 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 OR2L2Q8NH16 312 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 SLC26A7Q8TE54 656 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 GANCQ8TET4 914 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 NAT14Q8WUY8 206 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ASB12Q8WXK4 309 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 FGF14Q92915 247 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 POP5Q969H6 163 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 REPS1Q96D71 796 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 METTL2AQ96IZ6 378 aaKnown RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 MARK4Q96L34 752 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 NPAS2Q99743 824 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 SH3GL1Q99961 368 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 TMEM79Q9BSE2 394 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 DUSP26Q9BV47 211 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 C1QTNF7Q9BXJ2 289 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 TRIM15Q9C019 465 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 BRINP2Q9C0B6 783 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 OR2AG1Q9H205 316 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 DPEP2Q9H4A9 486 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 C8orf33Q9H7E9 229 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 LRTM1Q9HBL6 345 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ZDHHC4Q9NPG8 344 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 C1orf109Q9NX04 203 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ASIC5Q9NY37 505 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 TMEM181Q9P2C4 612 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ATXN10Q9UBB4 475 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 LEF1Q9UJU2 399 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 ACSL5Q9ULC5 683 aa4.29□□□□□ -1.72
SRP54-212ENST00000556992 ZNF490Q9ULM2 529 aaPredicted RBP4.29□□□□□ -1.72
SRP54-212ENST00000556992 EDARQ9UNE0 448 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms