RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CSTF2P33240 577 aaKnown RBP eCLIP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SNRPD1P62314 119 aaKnown RBP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF630Q2M218 657 aaPredicted RBP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 TBRG1Q3YBR2 411 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 HS6ST3Q8IZP7 471 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 VANGL1Q8TAA9 524 aaPredicted RBP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 DMRTB1Q96MA1 342 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SUV39H2Q9H5I1 410 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SEC14L4Q9UDX3 406 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 LRFN2Q9ULH4 789 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 EXO1Q9UQ84 846 aaKnown RBP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 MEIOCA2RUB1 952 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 ARRDC5A6NEK1 342 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 HMX3A6NHT5 357 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 A8MV72 311 aaPredicted RBP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 ARHGEF33A8MVX0 844 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 TRAPPC2P0DI81 140 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 TRAPPC2BP0DI82 140 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 IL7P13232 177 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SOX3P41225 446 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SPINT3P49223 89 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 BAK1Q16611 211 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 ZMAT1Q5H9K5 638 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SIMC1Q8NDZ2 872 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 TRMT2BQ96GJ1 504 aaKnown RBP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 WDFY2Q96P53 400 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 IL4I1Q96RQ9 567 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SLC22A12Q96S37 553 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 RACGAP1Q9H0H5 632 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 NMNAT1Q9HAN9 279 aaPredicted RBP16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SLC25A19Q9HC21 320 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 SNTG1Q9NSN8 517 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 FAM8A1Q9UBU6 413 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 CD84Q9UIB8 345 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 PPIL1Q9Y3C6 166 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 ENTPD6O75354 484 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 C1SP09871 688 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ENDOUP21128 410 aaKnown RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 AZGP1P25311 298 aaKnown RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 PCDH1Q08174 1060 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 SPHARQ15513 63 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF79Q15937 498 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 RASGRP3Q8IV61 690 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 LAX1Q8IWV1 398 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 SLC34A3Q8N130 599 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ECHDC3Q96DC8 303 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 OR4K3Q96R72 315 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 TMEM175Q9BSA9 504 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 SRRQ9GZT4 340 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 STOX2Q9P2F5 926 aaPredicted RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 LSM2Q9Y333 95 aaKnown RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 MAP4K5Q9Y4K4 846 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 TRBC2A0A5B9 178 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 SLC35F4A4IF30 521 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 GREM1O60565 184 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 CHI3L1P36222 383 aaPredicted RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 RPS5P46782 204 aaKnown RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 RPS13P62277 151 aaKnown RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 PSPHP78330 225 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 EEF1A2Q05639 463 aaKnown RBP16.79■□□□□ 0.28
SYNE3-202ENST00000553340 SCN1BQ07699 218 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF763Q0D2J5 394 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 LMAN2Q12907 356 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 MEDAGQ5VYS4 303 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ADAMTS19Q8TE59 1207 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 KLHL6Q8WZ60 621 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 TMEM246Q9BRR3 403 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 RHCGQ9UBD6 479 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ACSL6Q9UKU0 697 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 RAB23Q9ULC3 237 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 STUB1Q9UNE7 303 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ANGPT4Q9Y264 503 aa16.79■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF670-ZNF695F2Z2N8 137 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 TLR4O00206 839 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 SLCO2B1O94956 709 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 IFNW1P05000 195 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 SRPRAP08240 638 aaKnown RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 CKMT1AP12532 417 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF8P17098 575 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 FLT3LGP49771 235 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 RACK1P63244 317 aaKnown RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 VEPH1Q14D04 833 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 TRIM60Q495X7 471 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF648Q5T619 568 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 Q6ZNB5 142 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 VN1R5Q7Z5H4 357 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 IFNL1Q8IU54 200 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 TMEM80Q96HE8 168 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 GPBP1L1Q9HC44 474 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 FZD3Q9NPG1 666 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 CMAHPQ9Y471 501 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 YIPF1Q9Y548 306 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 ANAPC1Q9H1A4 1944 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 LINC00854A0A1B0GVQ3 168 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 A0A1W2PQ09 198 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 TFECO14948 347 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 CSO75390 466 aaKnown RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 PSIP1O75475 530 aaKnown RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 CRYBB2P43320 205 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms