RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 NUDT9Q9BW91 350 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 ROGDIQ9GZN7 287 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 KCMF1Q9P0J7 381 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 PPT2Q9UMR5 302 aa18.7■□□□□ 0.58
CPSF1-209ENST00000532725 SAP18O00422 153 aaKnown RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 RTCAO00442 366 aaKnown RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 SCELO95171 688 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 ETHE1O95571 254 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 CPA3P15088 417 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 NR1D1P20393 614 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 JAK1P23458 1154 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 CERS1P27544 350 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 ARFIP1P53367 373 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 LIM2P55344 173 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 DNAJB13P59910 316 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 EEF1A2Q05639 463 aaKnown RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 NFATC3Q12968 1075 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 CUL3Q13618 768 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 MYBPC3Q14896 1274 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 PCOLCEQ15113 449 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 NSDHLQ15738 373 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 AP5B1Q2VPB7 878 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 LACTB2Q53H82 288 aaPredicted RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 C10orf62Q5T681 223 aaPredicted RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 OR4C11Q6IEV9 310 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 LANCL3Q6ZV70 420 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 CPEB2Q7Z5Q1 589 aaKnown RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 ANKRD37Q7Z713 158 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 PARP9Q8IXQ6 854 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 SRRM1Q8IYB3 904 aaKnown RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 ACOT4Q8N9L9 421 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 RGMAQ96B86 450 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 APOPT1Q96IL0 206 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 IMMP1LQ96LU5 166 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 ZNF382Q96SR6 550 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 SMAD5Q99717 465 aaKnown RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 ZNF552Q9H707 407 aaPredicted RBP18.69■□□□□ 0.58
CPSF1-209ENST00000532725 ZNF160Q9HCG1 818 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 OXSMQ9NWU1 459 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 DAPP1Q9UN19 280 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 SCN2AQ99250 2005 aa18.69■□□□□ 0.58
CPSF1-209ENST00000532725 NSG1A0A0A6YYJ2 146 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 PSMD12O00232 456 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-209ENST00000532725 CYR61O00622 381 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 PRMT3O60678 531 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 OR4F21O95013 312 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 CREB1P16220 341 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 HIST1H1TP22492 207 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-209ENST00000532725 TSFMP43897 325 aaKnown RBP18.68■□□□□ 0.58
CPSF1-209ENST00000532725 RAB38P57729 211 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 PHEXP78562 749 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 RAPSNQ13702 412 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 ABRAXAS2Q15018 415 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 QSOX2Q6ZRP7 698 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 ASB18Q6ZVZ8 466 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 AMER2Q8N7J2 671 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 TSLPQ969D9 159 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 PTCHD1Q96NR3 888 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 WDR77Q9BQA1 342 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-209ENST00000532725 SORBS1Q9BX66 1292 aaKnown RBP18.68■□□□□ 0.58
CPSF1-209ENST00000532725 ZNF717Q9BY31 904 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-209ENST00000532725 GSTO2Q9H4Y5 243 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 LYRM4Q9HD34 91 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 PRM3Q9NNZ6 103 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 GPR83Q9NYM4 423 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 TRPS1Q9UHF7 1281 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 PCDHGB7Q9Y5F8 929 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 BSNQ9UPA5 3926 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 DOCK10Q96BY6 2186 aa18.68■□□□□ 0.58
CPSF1-209ENST00000532725 IGHV3-20A0A0C4DH32 117 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 PLPP1O14494 284 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 MLYCDO95822 493 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 ITGA3P26006 1051 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 PGDP52209 483 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 NAGLUP54802 743 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 C19orf57Q0VDD7 668 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 LCP2Q13094 533 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 IFT88Q13099 833 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 KRT71Q3SY84 523 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 BEND6Q5SZJ8 279 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-209ENST00000532725 FAM219BQ5XKK7 198 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 TTC19Q6DKK2 380 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-209ENST00000532725 CCNYL1Q8N7R7 359 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 TMEM52Q8NDY8 209 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 ZIM3Q96PE6 472 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 MAPKAP1Q9BPZ7 522 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 TUBB6Q9BUF5 446 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 COPS7BQ9H9Q2 264 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-209ENST00000532725 PRDM9Q9NQV7 894 aa18.67■□□□□ 0.58
CPSF1-209ENST00000532725 FARSBQ9NSD9 589 aaKnown RBP18.67■□□□□ 0.58
CPSF1-209ENST00000532725 C19orf25Q9UFG5 118 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-209ENST00000532725 IGKV3D-11A0A0A0MRZ8 115 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 CCDC151A5D8V7 595 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 B8ZZF3 427 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 UBFD1O14562 309 aaKnown RBP18.66■□□□□ 0.58
CPSF1-209ENST00000532725 SPAG7O75391 227 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 MAOAP21397 527 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 BSGP35613 385 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 RAP1GDS1P52306 607 aa18.66■□□□□ 0.58
CPSF1-209ENST00000532725 HNRNPFP52597 415 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms