RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ABHD18Q0P651 414 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 ERV3-1Q14264 604 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 NKAIN1Q4KMZ8 207 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 ATP6AP1LQ52LC2 224 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 SPIN4Q56A73 249 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 MLIPQ5VWP3 458 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 IGF2-ASQ6U949 168 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 CYP20A1Q6UW02 462 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 FAM198BQ6UWH4 519 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 TMEM151BQ8IW70 566 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 PRSS58Q8IYP2 241 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 CHMP6Q96FZ7 201 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 PEX11GQ96HA9 241 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 NAF1Q96HR8 494 aaKnown RBP12.98□□□□□ -0.33
CD44-224ENST00000526669 SERINC2Q96SA4 455 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 EBF4Q9BQW3 602 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 SPRY4Q9C004 299 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 PFDN4Q9NQP4 134 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 THSD1Q9NS62 852 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 SLC22A11Q9NSA0 550 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 G3BP2Q9UN86 482 aaKnown RBP12.98□□□□□ -0.33
CD44-224ENST00000526669 CDC14AQ9UNH5 594 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 PCDHGA7Q9Y5G6 932 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 A0A088AWK7 358 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 A0A0A6YYD5 115 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 GNG14A0A1W2PPG7 69 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 H0YIG0 161 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 STMND1H3BQB6 276 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 PRKRAO75569 313 aaKnown RBP12.97□□□□□ -0.33
CD44-224ENST00000526669 TROVE2P10155 538 aaKnown RBP eCLIP12.97□□□□□ -0.33
CD44-224ENST00000526669 ZNF10P21506 573 aaPredicted RBP12.97□□□□□ -0.33
CD44-224ENST00000526669 AGXTP21549 392 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 PRPH2P23942 346 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 SHC2P98077 582 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 SLAMF1Q13291 335 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 TGIF1Q15583 401 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 TBC1D25Q3MII6 688 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 RFTN2Q52LD8 501 aaPredicted RBP12.97□□□□□ -0.33
CD44-224ENST00000526669 C6orf136Q5SQH8 315 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 CCNYL2Q5T2Q4 361 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 FAM69BQ5VUD6 431 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 PRMT9Q6P2P2 845 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 SHISA6Q6ZSJ9 500 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 PAGE2Q7Z2X7 111 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 NLGN4XQ8N0W4 816 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 FAM47BQ8NA70 645 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 FNDC5Q8NAU1 212 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 NLGN4YQ8NFZ3 816 aaPredicted RBP12.97□□□□□ -0.33
CD44-224ENST00000526669 OR51Q1Q8NH59 317 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 CLHC1Q8NHS4 586 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 CT55Q8WUE5 264 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 MVB12AQ96EY5 273 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 SLC45A3Q96JT2 553 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 MARK4Q96L34 752 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 PPP3R2Q96LZ3 170 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 LRFN5Q96NI6 719 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 OR52B2Q96RD2 323 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 CSF3RQ99062 836 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 TRIM55Q9BYV6 548 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 ROGDIQ9GZN7 287 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 DDX31Q9H8H2 851 aaKnown RBP12.97□□□□□ -0.33
CD44-224ENST00000526669 IFT80Q9P2H3 777 aaPredicted RBP12.97□□□□□ -0.33
CD44-224ENST00000526669 TRPC4Q9UBN4 977 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 CTSFQ9UBX1 484 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 GPN3Q9UHW5 284 aaPredicted RBP12.97□□□□□ -0.33
CD44-224ENST00000526669 ANGPTL2Q9UKU9 493 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 DLGAP4Q9Y2H0 992 aa12.97□□□□□ -0.33
CD44-224ENST00000526669 CHD8Q9HCK8 2581 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 A0A0G2JND7 137 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 LOC101059948A0A1B0GTJ6 334 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 FAM227AF5H4B4 570 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 CNOT3O75175 753 aaKnown RBP12.96□□□□□ -0.33
CD44-224ENST00000526669 JRKO75564 520 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 MYO1DO94832 1006 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 SCELO95171 688 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 ANXA4P09525 319 aaPredicted RBP12.96□□□□□ -0.33
CD44-224ENST00000526669 CCNYL3P0C7X3 344 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 ALOX15P16050 662 aaPredicted RBP12.96□□□□□ -0.33
CD44-224ENST00000526669 XCR1P46094 333 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 IDH3AP50213 366 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 MAPK12P53778 367 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 LIM2P55344 173 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 RAB38P57729 211 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 SKP1P63208 163 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 DSG2Q14126 1118 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 KIAA0040Q15053 153 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 VWA2Q5GFL6 755 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 MFSD4BQ5TF39 518 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 NOXRED1Q6NXP6 359 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 EPGNQ6UW88 154 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 CACNA2D3Q8IZS8 1091 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 MMP21Q8N119 569 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 ESX1Q8N693 406 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 UCN3Q969E3 161 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 ZNF578Q96N58 590 aaPredicted RBP12.96□□□□□ -0.33
CD44-224ENST00000526669 CCT7Q99832 543 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 TMEM120AQ9BXJ8 343 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 B3GNT4Q9C0J1 378 aa12.96□□□□□ -0.33
CD44-224ENST00000526669 TEX10Q9NXF1 929 aaPredicted RBP12.96□□□□□ -0.33
CD44-224ENST00000526669 MCM8Q9UJA3 840 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms