RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CLCN2P51788 898 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 MTTPP55157 894 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 HSD17B7P56937 341 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 MLF1P58340 268 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 CHIT1Q13231 466 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 TRADDQ15628 312 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 ZRSR2Q15696 482 aaKnown RBP12.79□□□□□ -0.36
TCOF1-215ENST00000515516 TBCCQ15814 346 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 KRTCAP3Q53RY4 240 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 ZDHHC24Q6UX98 284 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 ZNF572Q7Z3I7 529 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-215ENST00000515516 CMC1Q7Z7K0 106 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 ZNF595Q8IYB9 648 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 FAM47BQ8NA70 645 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 B3GNT7Q8NFL0 401 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 RELTQ969Z4 430 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 MRRFQ96E11 262 aaKnown RBP12.79□□□□□ -0.36
TCOF1-215ENST00000515516 WDR34Q96EX3 536 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 SCMH1Q96GD3 660 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 KCNC2Q96PR1 638 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 NPAS2Q99743 824 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 AICDAQ9GZX7 198 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 OPTCQ9UBM4 332 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 FBXW2Q9UKT8 454 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 ZNF490Q9ULM2 529 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-215ENST00000515516 ANGPTL3Q9Y5C1 460 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 SPACA6W5XKT8 324 aa12.79□□□□□ -0.36
TCOF1-215ENST00000515516 MDC1Q14676 2089 aaKnown RBP12.78□□□□□ -0.36
TCOF1-215ENST00000515516 TRBV11-1A0A0K0K1C0 115 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 K7EPI3 171 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 ZG16O60844 167 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 KERAO60938 352 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 SLC25A12O75746 678 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 URI1O94763 535 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-215ENST00000515516 IFNA16P05015 189 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 SLC35E2BP0CK96 405 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 PCNAP12004 261 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 SERPINB1P30740 379 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 MSH2P43246 934 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 SLC7A5Q01650 507 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 SRSF11Q05519 484 aaKnown RBP12.78□□□□□ -0.36
TCOF1-215ENST00000515516 EFTUD2Q15029 972 aaKnown RBP eCLIP12.78□□□□□ -0.362e-6■■■■■ 57.6
TCOF1-215ENST00000515516 TERF2Q15554 542 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 UAP1Q16222 522 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-215ENST00000515516 FAM83EQ2M2I3 478 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 ADPRMQ3LIE5 342 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 MED27Q6P2C8 311 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 KLC3Q6P597 504 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 ABHD17CQ6PCB6 329 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 CHSY3Q70JA7 882 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 GALNTL5Q7Z4T8 443 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 ISCA2Q86U28 154 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 TMEM132CQ8N3T6 1108 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 NFAM1Q8NET5 270 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-215ENST00000515516 VMP1Q96GC9 406 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 MAGED4Q96JG8 741 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 QRFPRQ96P65 431 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 F2RL3Q96RI0 385 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 HES7Q9BYE0 225 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 MTRF1LQ9UGC7 380 aaKnown RBP12.78□□□□□ -0.36
TCOF1-215ENST00000515516 MAST4O15021 2626 aa12.78□□□□□ -0.36
TCOF1-215ENST00000515516 PRRC2CQ9Y520 2896 aaKnown RBP12.77□□□□□ -0.36
TCOF1-215ENST00000515516 ESYT3A0FGR9 886 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 CCDC189A1A4V9 331 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 NPIPA5E9PKD4 350 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 UBXN8O00124 270 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 CCL21O00585 134 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 NEURL1O76050 574 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 C1QAP02745 245 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 EPB42P16452 691 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 TNNI3P19429 210 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 CERS1P27544 350 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 DCTP40126 519 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 CASP2P42575 452 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 HLCSP50747 726 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 LIM2P55344 173 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 GUCY2DQ02846 1103 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 STX4Q12846 297 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 BMPR2Q13873 1038 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 AP5B1Q2VPB7 878 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 TMEM35AQ53FP2 167 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 MROH9Q5TGP6 573 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 ZNF787Q6DD87 383 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 VN1R5Q7Z5H4 357 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-215ENST00000515516 CLNKQ7Z7G1 428 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 SCUBE1Q8IWY4 988 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 SLC34A3Q8N130 599 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 TMEM156Q8N614 296 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 C7orf57Q8NEG2 295 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 THAP3Q8WTV1 239 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-215ENST00000515516 NXNL1Q96CM4 212 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 CENPKQ9BS16 269 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 LRRC1Q9BTT6 524 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 TBCDQ9BTW9 1192 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 TSPYL1Q9H0U9 437 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 ADAP2Q9NPF8 381 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 IGSF5Q9NSI5 407 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 ADGRE2Q9UHX3 823 aa12.77□□□□□ -0.37
TCOF1-215ENST00000515516 SH3BGRL2Q9UJC5 107 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms