RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CDNFQ49AH0 187 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 AARDQ4LEZ3 155 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 PDSS1Q5T2R2 415 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 TNFAIP8L2Q6P589 184 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ENPP7Q6UWV6 458 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 KBTBD6Q86V97 674 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ZFP82Q8N141 532 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 OR2T33Q8NG76 320 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 OR7G3Q8NG95 312 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 JOSD2Q8TAC2 188 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 TSPAN10Q9H1Z9 355 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 SMCO4Q9NRQ5 59 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 SLC22A11Q9NSA0 550 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 CCL15-CCL14A0A0B4J2E2 113 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 GOT2P00505 430 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 VIPP01282 170 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 IFNGR1P15260 489 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 KLRC2P26717 231 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 AVPR1BP47901 424 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 GINS1Q14691 196 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 CCL15Q16663 113 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 CLEC12AQ5QGZ9 265 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 SIAH1Q8IUQ4 282 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 NPAS3Q8IXF0 933 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ANKRD53Q8N9V6 530 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 AVL9Q8NBF6 648 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 OR52E4Q8NGH9 312 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 VPS25Q9BRG1 176 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ATG5Q9H1Y0 275 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ABHD16BQ9H3Z7 469 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 IMP3Q9NV31 184 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 CDC14AQ9UNH5 594 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 NEXMIFQ5QGS0 1516 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 RPS10-NUDT3A0A1W2PQS6 291 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 NPIPA5E9PKD4 350 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ACOT7O00154 380 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 PPP1R2P9O14990 202 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 OR1F1O43749 312 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 TRAPPC2P0DI81 140 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 TRAPPC2BP0DI82 140 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 BPIP17213 487 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 RFC2P35250 354 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 RPS10P46783 165 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 NCBP2P52298 156 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 KCNC3Q14003 757 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 NFIXQ14938 502 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 PPA1Q15181 289 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 RTL6Q6ICC9 239 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 GTF2H5Q6ZYL4 71 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 PLPPR4Q7Z2D5 763 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 FAM83FQ8NEG4 500 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 OVCA2Q8WZ82 227 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ACTRT3Q9BYD9 372 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ABCG4Q9H172 646 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 SIRPGQ9P1W8 387 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 ACSL6Q9UKU0 697 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 NPIPA1Q9UND3 350 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 UBE2J1Q9Y385 318 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 PCDHGA5Q9Y5G8 931 aa10.85□□□□□ -0.67
LIMCH1-217ENST00000512946 A0A096LPI6 279 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 SLC1A7O00341 560 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 VILLO15195 856 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 ARPC5O15511 151 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 FMO6PO60774 539 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 EIF2B1Q14232 305 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 UPP1Q16831 310 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 PRSS55Q6UWB4 352 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 BEND4Q6ZU67 534 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 GAREM2Q75VX8 874 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 SLC9B2Q86UD5 537 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 NELL2Q99435 816 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 RBCK1Q9BYM8 510 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 SLC25A31Q9H0C2 315 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 RAB9BQ9NP90 201 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 TMEM248Q9NWD8 314 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 PCDHB14Q9Y5E9 798 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 NPIPA7E9PJI5 369 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 INSIG1O15503 277 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 GPR137BO60478 399 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 RPP14O95059 124 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 EPOP01588 193 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 LCKP06239 509 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 NPIPA8P0DM63 369 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 CD9P21926 228 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 ADORA2AP29274 412 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 SERPINA9Q86WD7 417 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 MINDY3Q9H8M7 445 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 DDX4Q9NQI0 724 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 POLE4Q9NR33 117 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 NRCAMQ92823 1304 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 IRS2Q9Y4H2 1338 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 A0A1W2PQ45 241 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 A0A1W2PQY0 241 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 A8MX80 341 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 TMEM150CB9EJG8 249 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 TNFRSF10AO00220 468 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 HEXBP07686 556 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 PIRTP0C851 137 aa10.84□□□□□ -0.67
LIMCH1-217ENST00000512946 PPP3CBP16298 524 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms