RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 GPRIN3Q6ZVF9 776 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CROCCP2Q86T23 111 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CCNYL1Q8N7R7 359 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ARMC2Q8NEN0 867 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ADAMTS18Q8TE60 1221 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RGMAQ96B86 450 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SLC25A23Q9BV35 468 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SLC25A18Q9H1K4 315 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ELOVL6Q9H5J4 265 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ATP13A2Q9NQ11 1180 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OXSMQ9NWU1 459 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 C19orf25Q9UFG5 118 aaPredicted RBP15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZNF225Q9UK10 706 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PPT2Q9UMR5 302 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 G3BP2Q9UN86 482 aaKnown RBP15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SNX6Q9UNH7 406 aa15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PCDHGA9Q9Y5G4 932 aaKnown RBP15.34■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 IGHV1-45A0A0A0MS14 117 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NSG1A0A0A6YYJ2 146 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 OR2W5A6NFC9 320 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 A6NL46 340 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 RTCAO00442 366 aaKnown RBP15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PLPP1O14494 284 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 B4GALT2O60909 372 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SCELO95171 688 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PRB1P04280 392 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HIST1H1TP22492 207 aaPredicted RBP15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ATP5A1P25705 553 aaKnown RBP15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TSFMP43897 325 aaKnown RBP15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ARFIP1P53367 373 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NAGLUP54802 743 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PKNOX1P55347 436 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CUL3Q13618 768 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PCLAFQ15004 111 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ABRAXAS2Q15018 415 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PCOLCEQ15113 449 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 AP5B1Q2VPB7 878 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 LACTB2Q53H82 288 aaPredicted RBP15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 OR4C11Q6IEV9 310 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TCTN3Q6NUS6 607 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 QSOX2Q6ZRP7 698 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 LANCL3Q6ZV70 420 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NDUFAF7Q7L592 441 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 GALNT16Q8N428 558 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ACOT4Q8N9L9 421 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PLPP5Q8NEB5 264 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FDCSPQ8NFU4 85 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MTFMTQ96DP5 389 aaKnown RBP15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FAM111AQ96PZ2 611 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SERPINI1Q99574 410 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SLC29A3Q9BZD2 475 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF160Q9HCG1 818 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 RIC8BQ9NVN3 520 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SLC17A7Q9P2U7 560 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 DAPP1Q9UN19 280 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TP53TG5Q9Y2B4 290 aa15.33■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FAM208BQ5VWN6 2430 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FAM227AF5H4B4 570 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PRMT3O60678 531 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ETHE1O95571 254 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CREB1P16220 341 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ITGA3P26006 1051 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 LIM2P55344 173 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 RCN2Q14257 317 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NSDHLQ15738 373 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SGO1Q5FBB7 561 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CFAP157Q5JU67 520 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FRMD7Q6ZUT3 714 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CPEB2Q7Z5Q1 589 aaKnown RBP15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ANKRD37Q7Z713 158 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 C10orf107Q8IVU9 208 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CDYL2Q8N8U2 506 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FAM47BQ8NA70 645 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TCP10LQ8TDR4 215 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SELENOMQ8WWX9 145 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TSLPQ969D9 159 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NUDT9Q9BW91 350 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SORBS1Q9BX66 1292 aaKnown RBP15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF700Q9H0M5 742 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CENPHQ9H3R5 247 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 LYRM4Q9HD34 91 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF71Q9NQZ8 489 aaPredicted RBP15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 GPR83Q9NYM4 423 aa15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MRPS33Q9Y291 106 aaKnown RBP15.32■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TYROBPO43914 113 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SEMA3DO95025 777 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PDYNP01213 254 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 KRT6AP02538 564 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 KRT6BP04259 564 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ENO1P06733 434 aaKnown RBP15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NR1D1P20393 614 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HMOX2P30519 316 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 KRT6CP48668 564 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PGDP52209 483 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SOX8P57073 446 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 BTG2P78543 158 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ASPHQ12797 758 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 RAPSNQ13702 412 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FAM219BQ5XKK7 198 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PARP9Q8IXQ6 854 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms