RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 UBAC1Q9BSL1 405 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 NUSAP1Q9BXS6 441 aaKnown RBP3.8□□□□□ -1.8
XRN1-213ENST00000489241 SIRPDQ9H106 197 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 TRPV6Q9H1D0 765 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 MTIF3Q9H2K0 278 aaKnown RBP3.8□□□□□ -1.8
XRN1-213ENST00000489241 PPANQ9NQ55 473 aaKnown RBP3.8□□□□□ -1.8
XRN1-213ENST00000489241 POLE3Q9NRF9 147 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 FAM212BQ9NTI7 297 aaPredicted RBP3.8□□□□□ -1.8
XRN1-213ENST00000489241 ELF5Q9UKW6 265 aaPredicted RBP3.8□□□□□ -1.8
XRN1-213ENST00000489241 SATB2Q9UPW6 733 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 ERVK-19Q9WJR5 959 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 TCF19Q9Y242 345 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 ETV7Q9Y603 341 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 SPATA31D1Q6ZQQ2 1576 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 KIAA1217Q5T5P2 1943 aa3.8□□□□□ -1.8
XRN1-213ENST00000489241 A0A087WUV0 522 aaPredicted RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 A0A0G2JLW4 131 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 A0A0U1RRA0 63 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 SSX5O60225 188 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 AKR7A3O95154 331 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 EDN1P05305 212 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 SFTPBP07988 381 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 ANPEPP15144 967 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 ITGA3P26006 1051 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 CCND2P30279 289 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 SLC6A12P48065 614 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 DCDC1P59894 354 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 HERV-K104P63124 156 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 KCNJ10P78508 379 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 CCZ1BP86790 482 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 CCZ1P86791 482 aaPredicted RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 SP3Q02447 781 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 GABPAQ06546 454 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 SPP2Q13103 211 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 SRSF9Q13242 221 aaKnown RBP eCLIP3.79□□□□□ -1.8
XRN1-213ENST00000489241 DPYSQ14117 519 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 GRB14Q14449 540 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 TAF7Q15545 349 aaPredicted RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 ZNF74Q16587 644 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 LRRC37A5PQ49AS3 106 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 FASTKD1Q53R41 847 aaKnown RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 RAET1GQ6H3X3 334 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 CEACAM20Q6UY09 585 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 LEKR1Q6ZMV7 388 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 FCRLAQ7L513 359 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 ADGRD2Q7Z7M1 963 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 SYVN1Q86TM6 617 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 TRPT1Q86TN4 253 aaKnown RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 MARVELD2Q8N4S9 558 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 TEX26Q8N6G2 289 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 STPG4Q8N801 248 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 OR2T11Q8NH01 316 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 GLYATL1Q969I3 302 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 MRPL53Q96EL3 112 aaKnown RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 GPR137Q96N19 417 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 TAAR6Q96RI8 345 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 COQ7Q99807 217 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 RAB17Q9H0T7 212 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 ATP13A3Q9H7F0 1226 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 ZNF665Q9H7R5 613 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.79□□□□□ -1.8
XRN1-213ENST00000489241 DDX28Q9NUL7 540 aaKnown RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 ACOXLQ9NUZ1 547 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 RNF186Q9NXI6 227 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 CNOT2Q9NZN8 540 aaKnown RBP3.79□□□□□ -1.8
XRN1-213ENST00000489241 HACD3Q9P035 362 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 POLKQ9UBT6 870 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 POMT2Q9UKY4 750 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 AP1M2Q9Y6Q5 423 aa3.79□□□□□ -1.8
XRN1-213ENST00000489241 MSGN1A6NI15 193 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 OGTO15294 1046 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 GRID2O43424 1007 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 PCDH7O60245 1069 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 NME2P1O60361 137 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 CYTIPO60759 359 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 GAS8-AS1O95177 125 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 NADKO95544 446 aaPredicted RBP3.78□□□□□ -1.8
XRN1-213ENST00000489241 DIRAS3O95661 229 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 PAK4O96013 591 aaPredicted RBP3.78□□□□□ -1.8
XRN1-213ENST00000489241 UMODP07911 640 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 FAM157CP0CG43 387 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 CEACAM1P13688 526 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 PRDX6P30041 224 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 STIP1P31948 543 aaKnown RBP3.78□□□□□ -1.8
XRN1-213ENST00000489241 HSPA1LP34931 641 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 ACAA2P42765 397 aaKnown RBP3.78□□□□□ -1.8
XRN1-213ENST00000489241 SLC1A3P43003 542 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 TNFRSF4P43489 277 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 KCNK10P57789 538 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 SLC26A5P58743 744 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 DUSP5Q16690 384 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 HSP90AA5PQ58FG0 334 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 FGD3Q5JSP0 725 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 PLPP4Q5VZY2 271 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 SNRNP48Q6IEG0 339 aaKnown RBP3.78□□□□□ -1.8
XRN1-213ENST00000489241 TCEAL6Q6IPX3 200 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 IRGCQ6NXR0 463 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 ABRAXAS1Q6UWZ7 409 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 TCEANCQ8N8B7 351 aa3.78□□□□□ -1.8
XRN1-213ENST00000489241 CNBD1Q8NA66 436 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms