RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 MVB12AQ96EY5 273 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 RILPQ96NA2 401 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 EBF4Q9BQW3 602 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 DPH7Q9BTV6 452 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 PITHD1Q9GZP4 211 aaPredicted RBP16.16■□□□□ 0.18
VIM-205ENST00000485947 MRPS30Q9NP92 439 aaKnown RBP16.16■□□□□ 0.18
VIM-205ENST00000485947 TCF7L2Q9NQB0 619 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 RIC8BQ9NVN3 520 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 KLHL20Q9Y2M5 609 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 PTRH2Q9Y3E5 179 aaKnown RBP16.16■□□□□ 0.18
VIM-205ENST00000485947 PCDHGA11Q9Y5H2 935 aa16.16■□□□□ 0.18
VIM-205ENST00000485947 MANBAO00462 879 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 CTSVO60911 334 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 ULK1O75385 1050 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 JUNP05412 331 aaKnown RBP16.15■□□□□ 0.18
VIM-205ENST00000485947 EZRP15311 586 aaKnown RBP16.15■□□□□ 0.18
VIM-205ENST00000485947 ITGAXP20702 1163 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 CXCR2P25025 360 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 SERPINB3P29508 390 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 SOX8P57073 446 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 IFT88Q13099 833 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 ZRSR2Q15696 482 aaKnown RBP16.15■□□□□ 0.18
VIM-205ENST00000485947 CPSF6Q16630 551 aaKnown RBP eCLIP16.15■□□□□ 0.18
VIM-205ENST00000485947 MUM1Q2TAK8 710 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 XKR7Q5GH72 579 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 WASHC2DQ5SRD0 308 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 VWA5B1Q5TIE3 1220 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 C1orf189Q5VU69 101 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 GARNL3Q5VVW2 1013 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 MRGPREQ86SM8 312 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 DDIASQ8IXT1 998 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 KRT78Q8N1N4 520 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 ABHD11Q8NFV4 315 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 UBE2E3Q969T4 207 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 TUBB1Q9H4B7 451 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 ELOVL6Q9H5J4 265 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 MRGBPQ9NV56 204 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 C5AR2Q9P296 337 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 CDC14AQ9UNH5 594 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 TRIM33Q9UPN9 1127 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 TSC22D4Q9Y3Q8 395 aa16.15■□□□□ 0.18
VIM-205ENST00000485947 BOD1L1Q8NFC6 3051 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 HYKKA2RU49 373 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 SLC28A1O00337 649 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 CCDC22O60826 627 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 CDH1P12830 882 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 CD22P20273 847 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 PSMB5P28074 263 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 EPHA3P29320 983 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 CCL11P51671 97 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 IRX1P78414 480 aaPredicted RBP16.14■□□□□ 0.17
VIM-205ENST00000485947 CATSPEREQ5SY80 951 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 FRG2Q64ET8 278 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 ZNF425Q6IV72 752 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 MED27Q6P2C8 311 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 FBXO42Q6P3S6 717 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 CLEC1AQ8NC01 280 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 SELENOMQ8WWX9 145 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 FRG2BQ96QU4 278 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 AIF1LQ9BQI0 150 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 ACAT2Q9BWD1 397 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 NT5DC2Q9H857 520 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 HEY2Q9UBP5 337 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 SH2B3Q9UQQ2 575 aa16.14■□□□□ 0.17
VIM-205ENST00000485947 EBAG9O00559 213 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 FFAR3O14843 346 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 PCDH17O14917 1159 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 GPR42O15529 346 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 RGS14O43566 566 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 DPM1O60762 260 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 CTSBP07858 339 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 SERPINA6P08185 405 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 HSD3B1P14060 373 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 MMP11P24347 488 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 HSD3B2P26439 372 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 VARSP26640 1264 aaKnown RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 SERPINB1P30740 379 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 HTR6P50406 440 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 CCR8P51685 355 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 VSX2P58304 361 aaPredicted RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 PHEXP78562 749 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 REEP5Q00765 189 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 CSTF3Q12996 717 aaKnown RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 ATP1A4Q13733 1029 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 SLBPQ14493 270 aaKnown RBP eCLIP16.13■□□□□ 0.17
VIM-205ENST00000485947 SMU1Q2TAY7 513 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 PRTGQ2VWP7 1150 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 LSM12Q3MHD2 195 aaKnown RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 TCHHL1Q5QJ38 904 aaPredicted RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 DCAF10Q5QP82 559 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 CPZQ66K79 652 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 TRIM46Q7Z4K8 759 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 PAQR7Q86WK9 346 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 LAS2Q8IYD9 372 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 GBP7Q8N8V2 638 aaPredicted RBP16.13■□□□□ 0.17
VIM-205ENST00000485947 OR4K1Q8NGD4 311 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 WDR20Q8TBZ3 569 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 THAP11Q96EK4 314 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 OR52B2Q96RD2 323 aa16.13■□□□□ 0.17
VIM-205ENST00000485947 SMAD5Q99717 465 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms