RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FAM129BQ96TA1 746 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CDX2Q99626 313 aaPredicted RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CPEB1Q9BZB8 566 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 SLC7A5P2Q9GIP4 190 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 POLR2J2Q9GZM3 115 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 MAGIXQ9H6Y5 334 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CRNNQ9UBG3 495 aaPredicted RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 MED16Q9Y2X0 877 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ZFHX2Q9C0A1 2572 aaPredicted RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 MUC6Q6W4X9 2439 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 IGLON5A6NGN9 336 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 IMPDH2P12268 514 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 AVPR1BP47901 424 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 EIF4EBP2Q13542 120 aaPredicted RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ALG1LQ6GMV1 187 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 REEP3Q6NUK4 255 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 PARS2Q7L3T8 475 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 PARGQ86W56 976 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 SLC5A8Q8N695 610 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 OR5AR1Q8NGP9 310 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF480Q8WV37 535 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ISG20Q96AZ6 181 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 RNFT2Q96EX2 444 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 SAMD11Q96NU1 681 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ABCB9Q9NP78 766 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM45AQ9NWC5 275 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 DNAJC27Q9NZQ0 273 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 HCN4Q9Y3Q4 1203 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 NBASA2RRP1 2371 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 A0A0J9YVX5 310 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 TMEM202A6NGA9 273 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 H1F0P07305 194 aaKnown RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CCDC159P0C7I6 412 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 HSD3B1P14060 373 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 BMP7P18075 431 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 HSD3B2P26439 372 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 GSTM2P28161 218 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 TPP2P29144 1249 aaPredicted RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CSNK1DP48730 415 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CSNK2BP67870 215 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ST3GAL4Q11206 333 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 DNASE1L3Q13609 305 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 RGNQ15493 299 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 TRIQKQ629K1 86 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 GRHL2Q6ISB3 625 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 BORAQ6PGQ7 559 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 USP30Q70CQ3 517 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 TRIM46Q7Z4K8 759 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ADGRD2Q7Z7M1 963 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CENPSQ8N2Z9 138 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 CHDHQ8NE62 594 aaPredicted RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 GAB3Q8WWW8 586 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF689Q96CS4 500 aaPredicted RBP11.16□□□□□ -0.62
NPHP4-204ENST00000460696 EID2BQ96D98 161 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 LRIG1Q96JA1 1093 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 TUBA1CQ9BQE3 449 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 ITPAQ9BY32 194 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 RPS6KB2Q9UBS0 482 aa11.16□□□□□ -0.62
NPHP4-204ENST00000460696 SNPHO15079 494 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 NDUFS4O43181 175 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 LCKP06239 509 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 STSP08842 583 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF10P21506 573 aaPredicted RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 CRHBPP24387 322 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 CCR4P51679 360 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 XKP51811 444 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 ERVK-21P61565 698 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 SHQ1Q6PI26 577 aaKnown RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 NXPE4Q6UWF7 544 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 ZNF513Q8N8E2 541 aaPredicted RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 JPH3Q8WXH2 748 aaPredicted RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 CPPED1Q9BRF8 314 aaPredicted RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 PCBD2Q9H0N5 130 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 SNTG1Q9NSN8 517 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 FBXL12Q9NXK8 326 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 RBMX2Q9Y388 322 aaKnown RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 OR1A2Q9Y585 309 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 M0R129 80 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 ARHGEF9O43307 516 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 OR10H2O60403 315 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 SNX4O95219 450 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 ACTR1BP42025 376 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 ACTR1AP61163 376 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 MVKQ03426 396 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 SMU1Q2TAY7 513 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 CDKL4Q5MAI5 379 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 Q6ZPB1 254 aaPredicted RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 SRFBP1Q8NEF9 429 aaKnown RBP11.15□□□□□ -0.62
NPHP4-204ENST00000460696 LGALS12Q96DT0 336 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 ADAP2Q9NPF8 381 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 IL1RAPQ9NPH3 570 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 PRDM6Q9NQX0 595 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 HSFX1Q9UBD0 423 aa11.15□□□□□ -0.62
NPHP4-204ENST00000460696 A0A1W2PP55 124 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.15□□□□□ -0.63
NPHP4-204ENST00000460696 FZD6O60353 706 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 BCAS1O75363 584 aaPredicted RBP11.15□□□□□ -0.63
NPHP4-204ENST00000460696 PIM1P11309 404 aaPredicted RBP11.15□□□□□ -0.63
NPHP4-204ENST00000460696 TCF3P15923 654 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 MATN1P21941 496 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms