RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MAPRE3Q9UPY8 281 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 MICAL3Q7RTP6 2002 aa11.39□□□□□ -0.59
MSH6-204ENST00000445503 ISPDA4D126 451 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TRIM64A6NGJ6 449 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 WWP2O00308 870 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 DYRK3O43781 588 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PRMT3O60678 531 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 VNN2O95498 520 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 FHP07954 510 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 NR2F6P10588 404 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 C5orf22Q49AR2 442 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ZNF544Q6NX49 715 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ZNF551Q7Z340 670 aaPredicted RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 BCDIN3DQ7Z5W3 292 aaKnown RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 CALHM3Q86XJ0 350 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 OXR1Q8N573 874 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 KLHL6Q8WZ60 621 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PHF21AQ96BD5 680 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PIP5K1AQ99755 562 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TBC1D17Q9HA65 648 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 CCDC177Q9NQR7 707 aaPredicted RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 NDUFAF4Q9P032 175 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 BOLA1Q9Y3E2 137 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 MYO9BQ13459 2157 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 LEFTY2O00292 366 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 FZD6O60353 706 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 WBP4O75554 376 aaKnown RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 SPNP16150 400 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 RORCP51449 518 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TBPL1P62380 186 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 VEZF1Q14119 521 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 MICAQ29983 383 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 BCL7AQ4VC05 210 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 CYP4Z2PQ8N1L4 340 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 KRT78Q8N1N4 520 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 MFSD4AQ8N468 514 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ZFP41Q8N8Y5 198 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 COL26A1Q96A83 441 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TIFAQ96CG3 184 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 CITED4Q96RK1 184 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 BCL7BQ9BQE9 202 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 YIPF2Q9BWQ6 316 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TEX12Q9BXU0 123 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 UCK2Q9BZX2 261 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 SLIRPQ9GZT3 109 aaKnown RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 RPRD1BQ9NQG5 326 aaKnown RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 MKLN1Q9UL63 735 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ZNF232Q9UNY5 417 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PLXNB2O15031 1838 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PDCD11Q14690 1871 aaKnown RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 METTL15A6NJ78 407 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 GLOD5A6NK44 160 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 CLDN24A6NM45 220 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ETHE1O95571 254 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 CH25HO95992 272 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 INHAP05111 366 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 C8AP07357 584 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 CRISP1P54107 249 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 RPS7P62081 194 aaKnown RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 SLC5A12Q1EHB4 618 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TJAP1Q5JTD0 557 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ZDHHC20Q5W0Z9 365 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 SLC8B1Q6J4K2 584 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PNCKQ6P2M8 343 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 KLHL17Q6TDP4 642 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ING5Q8WYH8 240 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 OVCA2Q8WZ82 227 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ARMC5Q96C12 935 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 HRASLS5Q96KN8 279 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TAS2R9Q9NYW1 312 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 ERVW-1Q9UQF0 538 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TNFRSF21O75509 655 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 CRISP3P54108 245 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PFN3P60673 137 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 SCN1BQ07699 218 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 QPRTQ15274 297 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 TPGS2Q68CL5 300 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 NEK10Q6ZWH5 1172 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 PHOX2BQ99453 314 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 EPYCQ99645 322 aa11.38□□□□□ -0.59
MSH6-204ENST00000445503 NMNAT1Q9HAN9 279 aaPredicted RBP11.38□□□□□ -0.59
MSH6-204ENST00000445503 NUAK1O60285 661 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 ENTPD6O75354 484 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 SLITRK5O94991 958 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 CXCL14O95715 111 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 C1SP09871 688 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 MPC1LP0DKB6 136 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 JUNDP17535 347 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 HOXA9P31269 272 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 SSTR4P31391 388 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 RPL3P39023 403 aaKnown RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 MRPL19P49406 292 aaKnown RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 SELENBP1Q13228 472 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 CBX2Q14781 532 aaPredicted RBP11.37□□□□□ -0.59
MSH6-204ENST00000445503 TBRG1Q3YBR2 411 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 PLET1Q6UQ28 207 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 LAPTM4BQ86VI4 370 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 GALNT13Q8IUC8 556 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 DTX3Q8N9I9 347 aa11.37□□□□□ -0.59
MSH6-204ENST00000445503 ZNF740Q8NDX6 193 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms