RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 HCRTR2O43614 444 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 CD9P21926 228 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 SOX2P48431 317 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF33AQ06730 810 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 RTP2Q5QGT7 225 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 PACRGLQ8N7B6 248 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 SLC22A8Q8TCC7 542 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.55■□□□□ 0.246e-7■■■□□ 17.6
PTPRF-209ENST00000438120 TM9SF3Q9HD45 589 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 C14orf105Q9NVL8 296 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 C19orf25Q9UFG5 118 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 A0A1W2PQU0 124 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 PROM1O43490 865 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 ARPC4P59998 168 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 LRP8Q14114 963 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 TP53INP2Q8IXH6 220 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 APCDD1Q8J025 514 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 OR8S1Q8NH09 359 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 POLDIP3Q9BY77 421 aaKnown RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 ADAMTS10Q9H324 1103 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 OR6C70A6NIJ9 312 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 HEPACAM2A8MVW5 462 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 LSM1O15116 133 aaKnown RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SOCS5O75159 536 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 PFKMP08237 780 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF12P17014 697 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SLC6A6P31641 620 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SLC18A1P54219 525 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 CDKN2DP55273 166 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 RPS26P62854 115 aaKnown RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 CARD17Q5XLA6 110 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 NRROSQ86YC3 692 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 LMO3Q8TAP4 145 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 TAS2R9Q9NYW1 312 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 HCN2Q9UL51 889 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 BCAS2O75934 225 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 VIPR2P41587 438 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 KIAA1614Q5VZ46 1190 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SLC36A4Q6YBV0 504 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SERINC5Q86VE9 423 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 ACSL5Q9ULC5 683 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 CA14Q9ULX7 337 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 HCN4Q9Y3Q4 1203 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF451Q9Y4E5 1061 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 FXYD6-FXYD2A0A087WZ82 144 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 HMGB3O15347 200 aaKnown RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SPARCP09486 303 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 CLRN1P58418 232 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SLAMF1Q13291 335 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 ELOCQ15369 112 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 MSLNLQ96KJ4 702 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 F2RL3Q96RI0 385 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 NPLQ9BXD5 320 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 FXYD6Q9H0Q3 95 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 PTGES2Q9H7Z7 377 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 GOLGA4Q13439 2230 aaKnown RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 CICQ96RK0 1608 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-209ENST00000438120 LATO43561 262 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 DFNA5O60443 496 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 UQCRC2P22695 453 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 GXYLT1Q4G148 440 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 AVL9Q8NBF6 648 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SEC14L1Q92503 715 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 SLC2A13Q96QE2 648 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 NLGN3Q9NZ94 848 aa16.54■□□□□ 0.24
PTPRF-209ENST00000438120 A0A1W2PPK0 400 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF840PA6NDX5 716 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 MAFKO60675 156 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 STC2O76061 302 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 DNAJB13P59910 316 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 PIGFQ07326 219 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 KCNC3Q14003 757 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 OCLNQ16625 522 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 TMEM107Q6UX40 140 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 SLC7A6OSQ96CW6 309 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 MEIS3P2A8K0S8 358 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 TSPAN4O14817 238 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 HLA-DPB1P04440 258 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 C1GALT1C1LP0DN25 315 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 PDSS1Q5T2R2 415 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ASPGQ86U10 573 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF227Q86WZ6 799 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 CARM1Q86X55 608 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 MED11Q9P086 117 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ALDOAP04075 364 aaKnown RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ITIH1P19827 911 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 GADD45AP24522 165 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 TBPL1P62380 186 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ABRAXAS2Q15018 415 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 C18orf21Q32NC0 220 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 TMEM225Q6GV28 225 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 INO80EQ8NBZ0 244 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 OR5T2Q8NGG2 359 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 SHKBP1Q8TBC3 707 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 TMEM41AQ96HV5 264 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 DPH2Q9BQC3 489 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 SMURF1Q9HCE7 757 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.53■□□□□ 0.24
PTPRF-209ENST00000438120 FAM221BA6H8Z2 402 aa16.53■□□□□ 0.24
PTPRF-209ENST00000438120 IQCF3P0C7M6 154 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms