RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SNTNA6NMZ2 147 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 GAPDHSO14556 408 aaPredicted RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 SLC2A2P11168 524 aaPredicted RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 TACR2P21452 398 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 SNRPGP62308 76 aaKnown RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 NCF4Q15080 339 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 WSCD2Q2TBF2 565 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 TMEM201Q5SNT2 666 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 RNLSQ5VYX0 342 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 PAQR6Q6TCH4 344 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ZNF598Q86UK7 904 aaKnown RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 RNF175Q8N4F7 328 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 PROKR2Q8NFJ6 384 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ACAT2Q9BWD1 397 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ANKRA2Q9H9E1 313 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 B3GAT2Q9NPZ5 323 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 C12orf4Q9NQ89 552 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 ABI2Q9NYB9 513 aaPredicted RBP10.26□□□□□ -0.77
USP54-204ENST00000422491 FLRT1Q9NZU1 646 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 MARCH2Q9P0N8 246 aa10.26□□□□□ -0.77
USP54-204ENST00000422491 F8W810 466 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 LYRM1O43325 122 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 PLOD3O60568 738 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 PRAMEF4O60810 478 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 GASTP01350 101 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 ANXA5P08758 320 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 DDX5P17844 614 aaKnown RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 ENPP1P22413 925 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 XCR1P46094 333 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 C21orf58P58505 322 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 SUZ12Q15022 739 aaKnown RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 PRAMEF9Q5VWM5 478 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 SPRYD7Q5W111 196 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 TRIQKQ629K1 86 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 C22orf42Q6IC83 251 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 MZT2BQ6NZ67 158 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 TEX261Q6UWH6 196 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 KCTD20Q7Z5Y7 419 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 Q8N402 240 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 L3MBTL4Q8NA19 623 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 TMEM145Q8NBT3 493 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 C19orf18Q8NEA5 215 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 NELL2Q99435 816 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 KCNJ15Q99712 375 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 SPON2Q9BUD6 331 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 HTATIP2Q9BUP3 242 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 KATNB1Q9BVA0 655 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 KATNAL1Q9BW62 490 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 CRISPLD1Q9H336 500 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 FBXO44Q9H4M3 255 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 GPATCH2Q9NW75 528 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 CORO2BQ9UQ03 480 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 PCDHGB7Q9Y5F8 929 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 U3KQ87 197 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 FAM240BA0A1B0GVZ2 78 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 SERTM1A2A2V5 107 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 TNFRSF21O75509 655 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 RFPL3O75679 317 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 POMCP01189 267 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 PRKAR1AP10644 381 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 ZNF250P15622 560 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 ATF6P18850 670 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 TNNI3P19429 210 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 PPIBP23284 216 aaKnown RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 SDC2P34741 201 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 DGKEP52429 567 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 MVDP53602 400 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 RGS1Q08116 209 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 P2RY14Q15391 338 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 FLYWCH1Q4VC44 716 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 ZNF770Q6IQ21 691 aaPredicted RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 TMEM65Q6PI78 240 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 FAM151BQ6UXP7 276 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 WDR53Q7Z5U6 358 aaPredicted RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 PDZD3Q86UT5 571 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 RBFAQ8N0V3 343 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 OR9Q1Q8NGQ5 310 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 PIH1D2Q8WWB5 315 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 MAGEB10Q96LZ2 347 aaPredicted RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 GFM1Q96RP9 751 aaKnown RBP10.25□□□□□ -0.77
USP54-204ENST00000422491 PIP5K1AQ99755 562 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 AIFM2Q9BRQ8 373 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 MED18Q9BUE0 208 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 DUSP26Q9BV47 211 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 LATS2Q9NRM7 1088 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 DNAJC27Q9NZQ0 273 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 NDOR1Q9UHB4 597 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 BTNL2Q9UIR0 455 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 STOML2Q9UJZ1 356 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 ST3GAL5Q9UNP4 418 aa10.25□□□□□ -0.77
USP54-204ENST00000422491 ARRDC5A6NEK1 342 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 TLR4O00206 839 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 KDELR3O43731 214 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ORC5O43913 435 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 TSC22D2O75157 780 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 PRAMEF1O95521 474 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 ZNF865P0CJ78 1059 aaPredicted RBP10.24□□□□□ -0.77
USP54-204ENST00000422491 POU1F1P28069 291 aa10.24□□□□□ -0.77
USP54-204ENST00000422491 HMGCLP35914 325 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms