RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 FITM2Q8N6M3 262 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 NPWQ8N729 165 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 PLD5Q8N7P1 536 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 BANPQ8N9N5 519 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 ARRDC3Q96B67 414 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 SPACA9Q96E40 222 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-202ENST00000409915 ALG14Q96F25 216 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 CELF6Q96J87 481 aaKnown RBP4.39□□□□□ -1.71
SF3B1-202ENST00000409915 OPALINQ96PE5 141 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 GABRG3Q99928 467 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 ECSITQ9BQ95 431 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 MESP1Q9BRJ9 268 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 FEM1AQ9BSK4 669 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 MRPS26Q9BYN8 205 aaKnown RBP4.39□□□□□ -1.71
SF3B1-202ENST00000409915 CTDSP1Q9GZU7 261 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 KLC2Q9H0B6 622 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 KCNN2Q9H2S1 579 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 ZNF696Q9H7X3 374 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 COQ10BQ9H8M1 238 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 MRPL47Q9HD33 250 aaKnown RBP4.39□□□□□ -1.71
SF3B1-202ENST00000409915 C8orf4Q9NR00 106 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 DIABLOQ9NR28 239 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 C1GALT1Q9NS00 363 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.39□□□□□ -1.71
SF3B1-202ENST00000409915 NCKIPSDQ9NZQ3 722 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 THAP10Q9P2Z0 257 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-202ENST00000409915 MBD2Q9UBB5 411 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 TRPC4Q9UBN4 977 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 DNAJB11Q9UBS4 358 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 VPS51Q9UID3 782 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 SLC45A2Q9UMX9 530 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 USP22Q9UPT9 525 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 ERVW-1Q9UQF0 538 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 USH1CQ9Y6N9 552 aa4.39□□□□□ -1.71
SF3B1-202ENST00000409915 ZFHX2Q9C0A1 2572 aaPredicted RBP4.39□□□□□ -1.71
SF3B1-202ENST00000409915 MYO18AQ92614 2054 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 LOC100509620A0A075B734 347 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 OOEPA6NGQ2 149 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 EIF4E1BA6NMX2 242 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ANXA2P2A6NMY6 339 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 H3BNX3 289 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 H3BS24 57 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 L7N2F9 121 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 QSOX1O00391 747 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 EEF2KO00418 725 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PLK4O00444 970 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RASGRF2O14827 1237 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ANGPT2O15123 496 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SMAD6O43541 496 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 DENRO43583 198 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SPRY1O43609 319 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 BUB1O43683 1085 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CYTIPO60759 359 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RAMP2O60895 175 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RNASEH1O60930 286 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ITGA10O75578 1167 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PROSCO94903 275 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 OR5F1O95221 314 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 MOCS3O95396 460 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 KRT75O95678 551 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 AGTP01019 485 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TGFAP01135 160 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RETP07949 1114 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ALOX5P09917 674 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 OCM2P0CE71 109 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 OCMP0CE72 109 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RAP2AP10114 183 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ETS2P15036 469 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ZNF8P17098 575 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PRKCAP17252 672 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PRKACAP17612 351 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 EPORP19235 508 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TCEA1P23193 301 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 AHCYP23526 432 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CXCR2P25025 360 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CHRNA3P32297 505 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 EVI2BP34910 448 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 THBS4P35443 961 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CYLC1P35663 651 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PLA2G5P39877 138 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 NBL1P41271 181 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FASLGP48023 281 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PSMD8P48556 350 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 MARCKSL1P49006 195 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PCYT1AP49585 367 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RAP1GDS1P52306 607 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 IST1P53990 364 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CDH6P55285 790 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SNU13P55769 128 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SSTP61278 116 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ST8SIA6P61647 398 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ECT2LQ008S8 904 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PMP22Q01453 160 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 GNA12Q03113 381 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ASPHQ12797 758 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CDC20Q12834 499 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CSTF3Q12996 717 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ENPP2Q13822 863 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PIGHQ14442 188 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 KRT81Q14533 505 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms