RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 PRTFDC1Q9NRG1 225 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 NPIPA1Q9UND3 350 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 ZNF835Q9Y2P0 537 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 KLF13Q9Y2Y9 288 aaPredicted RBP13.78□□□□□ -0.2
CBX3-203ENST00000409747 MTO1Q9Y2Z2 717 aaKnown RBP13.78□□□□□ -0.2
CBX3-203ENST00000409747 TRBV11-1A0A0K0K1C0 115 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 TCRBV9S1A1TA0A576 114 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 A8MUA0 341 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 PHGDHO43175 533 aaKnown RBP13.78□□□□□ -0.2
CBX3-203ENST00000409747 CD1DP15813 335 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 AGAP20933 346 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 ST13P50502 369 aaKnown RBP13.78□□□□□ -0.2
CBX3-203ENST00000409747 RAB10P61026 200 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 SLC13A2Q13183 592 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 LAPTM5Q13571 262 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 C3AR1Q16581 482 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 C18orf21Q32NC0 220 aaPredicted RBP13.78□□□□□ -0.2
CBX3-203ENST00000409747 ADPRMQ3LIE5 342 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 XKR6Q5GH73 641 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 ZNF468Q5VIY5 522 aaPredicted RBP13.78□□□□□ -0.2
CBX3-203ENST00000409747 EID3Q8N140 333 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 SNX31Q8N9S9 440 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 APCDD1LQ8NCL9 501 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 PDPRQ8NCN5 879 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 SPATA4Q8NEY3 305 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 VMP1Q96GC9 406 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 SERINC2Q96SA4 455 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 CCDC77Q9BR77 488 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 ROGDIQ9GZN7 287 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 CD274Q9NZQ7 290 aa13.78□□□□□ -0.2
CBX3-203ENST00000409747 FAM159BA6NKW6 160 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 TAPBPO15533 448 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 ASNA1O43681 348 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 PIAS1O75925 651 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 ABOP16442 354 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 TFEBP19484 476 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 SPRP35270 261 aaPredicted RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 HSPA7P48741 367 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 PLA2G16P53816 162 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 MTTPP55157 894 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 CAV1Q03135 178 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 ZKSCAN8Q15776 578 aaPredicted RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 HIST2H2ACQ16777 129 aaPredicted RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 HIST2H2AA3Q6FI13 130 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 MYO7BQ6PIF6 2116 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 C3orf62Q6ZUJ4 267 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 SIAH3Q8IW03 269 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 WDR34Q96EX3 536 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 UNKQ9C0B0 810 aaKnown RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 TSPAN10Q9H1Z9 355 aaPredicted RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 ADAP2Q9NPF8 381 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 PNO1Q9NRX1 252 aaKnown RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 TINAGQ9UJW2 476 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 RNF112Q9ULX5 631 aa13.77□□□□□ -0.21
CBX3-203ENST00000409747 PPIEQ9UNP9 301 aaKnown RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 UTP11Q9Y3A2 253 aaKnown RBP13.77□□□□□ -0.21
CBX3-203ENST00000409747 A0A0G2JN53 185 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 CXorf49A8MYA2 514 aaPredicted RBP13.76□□□□□ -0.21
CBX3-203ENST00000409747 KLRC4-KLRK1H3BQV0 150 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 RAD51CO43502 376 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 HTR1EP28566 365 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 TNFRSF8P28908 595 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 PTGER4P35408 488 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 KCNC1P48547 511 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 RUNX2Q13950 521 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 GRTP1Q5TC63 336 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 LRRC70Q7Z2Q7 622 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 CTAGE3PQ8IX95 158 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 TMEM132CQ8N3T6 1108 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 SPATA6LQ8N4H0 392 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 TMEM156Q8N614 296 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 FAM47BQ8NA70 645 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 SRFBP1Q8NEF9 429 aaKnown RBP13.76□□□□□ -0.21
CBX3-203ENST00000409747 C7orf57Q8NEG2 295 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 UBE2E3Q969T4 207 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 KIAA1191Q96A73 305 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 QRFPRQ96P65 431 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 KCNC2Q96PR1 638 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 RAB17Q9H0T7 212 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 FBXW2Q9UKT8 454 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 PYCARDQ9ULZ3 195 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 ITGA10O75578 1167 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 STX2P32856 288 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 MRPS25P82663 173 aaKnown RBP13.76□□□□□ -0.21
CBX3-203ENST00000409747 IRF8Q02556 426 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 DOC2AQ14183 400 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 EFTUD2Q15029 972 aaKnown RBP eCLIP13.76□□□□□ -0.212e-11■■■■□ 23.8
CBX3-203ENST00000409747 OR4D1Q15615 310 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 ELAVL1Q15717 326 aaKnown RBP13.76□□□□□ -0.21
CBX3-203ENST00000409747 TBCCQ15814 346 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 ZNF630Q2M218 657 aaPredicted RBP13.76□□□□□ -0.21
CBX3-203ENST00000409747 ABHD17CQ6PCB6 329 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 RAPH1Q70E73 1250 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 GPALPP1Q8IXQ4 340 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 CYP4Z2PQ8N1L4 340 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 CPSF7Q8N684 471 aaKnown RBP13.76□□□□□ -0.21
CBX3-203ENST00000409747 STAG3L4Q8TBR4 150 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 UBXN10Q96LJ8 280 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 PRM3Q9NNZ6 103 aa13.76□□□□□ -0.21
CBX3-203ENST00000409747 GRHL1Q9NZI5 618 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms