RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TRMT61AQ96FX7 289 aaKnown RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 PKP4Q99569 1192 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 DPCDQ9BVM2 203 aaPredicted RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 SLC7A5P2Q9GIP4 190 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 FAM83DQ9H4H8 585 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 ING3Q9NXR8 418 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 RAB23Q9ULC3 237 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 TRIOBPQ9H2D6 2365 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 GNG14A0A1W2PPG7 69 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 CLDN7O95471 211 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 RPS17P08708 135 aaKnown RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 UBL4AP11441 157 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 PSMA1P25786 263 aaKnown RBP12.45□□□□□ -0.42
PTPRN-202ENST00000409251 CHRNEQ04844 493 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 STK11Q15831 433 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 SLC46A3Q7Z3Q1 461 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 TSPAN33Q86UF1 283 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 SH3KBP1Q96B97 665 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 NIPSNAP1Q9BPW8 284 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 BOCQ9BWV1 1114 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 CLPBQ9H078 707 aa12.45□□□□□ -0.42
PTPRN-202ENST00000409251 DRGXA6NNA5 263 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 CLCA1A8K7I4 914 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 CDK2AP1O14519 115 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 SLC16A6O15403 523 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ABLIM3O94929 683 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 IGFBP1P08833 259 aaPredicted RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 LAG3P18627 525 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 HOXA9P31269 272 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 PRMT2P55345 433 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 OR8J3Q8NGG0 315 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 TMEM121BQ9BXQ6 578 aaPredicted RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 SLC23A1Q9UHI7 598 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 LSM7Q9UK45 103 aaKnown RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 MIA3Q5JRA6 1907 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 PRAMEF33A0A0G2JMD5 474 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 CLDN24A6NM45 220 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ATP6V1G2-DDX39BF2Z307 99 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 MYL12BO14950 172 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 PRAMEF10O60809 474 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 PRLP01236 227 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 CYP17A1P05093 508 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ZDHHC11BP0C7U3 371 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 KDELR2P33947 212 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ATP6V1E1P36543 226 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 KIR3DL1P43629 444 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 FAPQ12884 760 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 RPA4Q13156 261 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 BOP1Q14137 746 aaKnown RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 EFR3AQ14156 821 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 SUZ12Q15022 739 aaKnown RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 TOR2AQ5JU69 321 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 AADATQ8N5Z0 425 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 BEST4Q8NFU0 473 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 PJA1Q8NG27 643 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ASB15Q8WXK1 588 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 PIGKQ92643 395 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 MAGEB10Q96LZ2 347 aaPredicted RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 FAM129BQ96TA1 746 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 KLF16Q9BXK1 252 aaPredicted RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 BRINP2Q9C0B6 783 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 TBC1D17Q9HA65 648 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ASAH2Q9NR71 780 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 TMEM184CQ9NVA4 438 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ZNF624Q9P2J8 865 aaPredicted RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 PCDHGA6Q9Y5G7 932 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 LOC105371267A0A1B0GV96 52 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ABHD14A-ACY1A0A1B0GW23 586 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ADAMDEC1O15204 470 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 GPX5O75715 221 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 NCR1O76036 304 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 KRT6AP02538 564 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 KRT6BP04259 564 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 SYPP08247 313 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 SLC2A2P11168 524 aaPredicted RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 RFX2P48378 723 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 YBEYP58557 167 aaPredicted RBP12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ST8SIA2Q92186 375 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ASIC4Q96FT7 647 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ZSWIM3Q96MP5 696 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 GORASP2Q9H8Y8 452 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 ACSL6Q9UKU0 697 aa12.44□□□□□ -0.42
PTPRN-202ENST00000409251 IGLV3-10A0A075B6K4 115 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 CASKO14936 926 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 ZNF780AO75290 641 aaPredicted RBP12.43□□□□□ -0.42
PTPRN-202ENST00000409251 SLC25A14O95258 325 aaPredicted RBP12.43□□□□□ -0.42
PTPRN-202ENST00000409251 EPB42P16452 691 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 VIPR2P41587 438 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 C2orf80Q0P641 193 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 LMAN2Q12907 356 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 COQ5Q5HYK3 327 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 Q6ZVU0 165 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 COL21A1Q96P44 957 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 NUSAP1Q9BXS6 441 aaKnown RBP12.43□□□□□ -0.42
PTPRN-202ENST00000409251 CHIAQ9BZP6 476 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 DERL2Q9GZP9 239 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 MAGEH1Q9H213 219 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 RNF121Q9H920 327 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 WBP1LQ9NX94 342 aa12.43□□□□□ -0.42
PTPRN-202ENST00000409251 MAP4K5Q9Y4K4 846 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms