RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CHIT1Q13231 466 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 TUBA3CQ13748 450 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 DOC2AQ14183 400 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 HIST2H2ACQ16777 129 aaPredicted RBP12.57□□□□□ -0.4
VCX3A-202ENST00000398729 ZNF324BQ6AW86 544 aaPredicted RBP12.57□□□□□ -0.4
VCX3A-202ENST00000398729 SP5Q6BEB4 398 aaPredicted RBP12.57□□□□□ -0.4
VCX3A-202ENST00000398729 HIST2H2AA3Q6FI13 130 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 TRIM40Q6P9F5 258 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 TUBA3EQ6PEY2 450 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 LGI4Q8N135 537 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 OR2L5Q8NG80 312 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 DNAJB8Q8NHS0 232 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 ELP5Q8TE02 316 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 ADAMTS18Q8TE60 1221 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 NR4A3Q92570 626 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 ATOH8Q96SQ7 321 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 UTP23Q9BRU9 249 aaKnown RBP12.57□□□□□ -0.4
VCX3A-202ENST00000398729 PRM3Q9NNZ6 103 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 MTRF1LQ9UGC7 380 aaKnown RBP12.57□□□□□ -0.4
VCX3A-202ENST00000398729 OSGIN2Q9Y236 505 aa12.57□□□□□ -0.4
VCX3A-202ENST00000398729 MYO7BQ6PIF6 2116 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 A0A087X1B8 175 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 IGKV3D-11A0A0A0MRZ8 115 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 SAGE2PA6NJ88 616 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 SYCE1LA8MT33 242 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 CLDN4O14493 209 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 CDK2AP1O14519 115 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 PRAMEF4O60810 478 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 KRT38O76015 456 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 EPORP19235 508 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 MTTPP55157 894 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 RAB38P57729 211 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 DLG1Q12959 904 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 TBCCQ15814 346 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 UAP1Q16222 522 aaPredicted RBP12.56□□□□□ -0.4
VCX3A-202ENST00000398729 FAM83EQ2M2I3 478 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 ADPRMQ3LIE5 342 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 ZNF766Q5HY98 468 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 MROH9Q5TGP6 573 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 PRAMEF9Q5VWM5 478 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 VN1R5Q7Z5H4 357 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 HORMAD2Q8N7B1 307 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 ZNF592Q92610 1267 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 UBE2E3Q969T4 207 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 MARVELD3Q96A59 401 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 NXNL1Q96CM4 212 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 MRRFQ96E11 262 aaKnown RBP12.56□□□□□ -0.4
VCX3A-202ENST00000398729 QRFPRQ96P65 431 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 SERINC2Q96SA4 455 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 NPAS2Q99743 824 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 CDCP1Q9H5V8 836 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 COPS7BQ9H9Q2 264 aaPredicted RBP12.56□□□□□ -0.4
VCX3A-202ENST00000398729 NECTIN3Q9NQS3 549 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 PRTFDC1Q9NRG1 225 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 OPTCQ9UBM4 332 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 ZNF490Q9ULM2 529 aaPredicted RBP12.56□□□□□ -0.4
VCX3A-202ENST00000398729 ENTPD4Q9Y227 616 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 MRPS33Q9Y291 106 aaKnown RBP12.56□□□□□ -0.4
VCX3A-202ENST00000398729 PCDHGB6Q9Y5F9 930 aa12.56□□□□□ -0.4
VCX3A-202ENST00000398729 CCDC189A1A4V9 331 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 GABRR3A8MPY1 467 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 A8MUA0 341 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 K7EPI3 171 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 UBXN8O00124 270 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 LRRTM2O43300 516 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 C2P06681 752 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 CD46P15529 392 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 CD22P20273 847 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 GRNP28799 593 aaKnown RBP12.55□□□□□ -0.4
VCX3A-202ENST00000398729 CD96P40200 585 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 CASP2P42575 452 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 MSH2P43246 934 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 TDGF1P3P51864 188 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 PER3P56645 1201 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 HSD17B7P56937 341 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 OC90Q02509 493 aaPredicted RBP12.55□□□□□ -0.4
VCX3A-202ENST00000398729 BMPR2Q13873 1038 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 RUNX2Q13950 521 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 RCN2Q14257 317 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 OR1C1Q15619 314 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 ADNP2Q6IQ32 1131 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 MED27Q6P2C8 311 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 ABHD17CQ6PCB6 329 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 GFRALQ6UXV0 394 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 RPS19BP1Q86WX3 136 aaKnown RBP12.55□□□□□ -0.4
VCX3A-202ENST00000398729 SCUBE1Q8IWY4 988 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 KIF2BQ8N4N8 673 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 MMGT1Q8N4V1 131 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 MDS2Q8NDY4 140 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 SRFBP1Q8NEF9 429 aaKnown RBP12.55□□□□□ -0.4
VCX3A-202ENST00000398729 MNS1Q8NEH6 495 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 RHEBL1Q8TAI7 183 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 UBTD2Q8WUN7 234 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 KCTD4Q8WVF5 259 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 SIGLEC12Q96PQ1 595 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 KCNC2Q96PR1 638 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 TSPYL1Q9H0U9 437 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 SNX15Q9NRS6 342 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 ANKRD10Q9NXR5 420 aa12.55□□□□□ -0.4
VCX3A-202ENST00000398729 ASB1Q9Y576 335 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms