RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 EXTL2Q9UBQ6 330 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 POLLQ9UGP5 575 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 LRRC72A6NJI9 287 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 DIRAS3O95661 229 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 SLC35F1Q5T1Q4 408 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 KIAA1161Q6NSJ0 714 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 DCP2Q8IU60 420 aaKnown RBP12.87□□□□□ -0.35
COL6A3-202ENST00000347401 OR1J4Q8NGS1 313 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 CNTNAP3BQ96NU0 1288 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 KLHL9Q9P2J3 617 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 ZNF175Q9Y473 711 aa12.87□□□□□ -0.35
COL6A3-202ENST00000347401 ATP6V1G2-DDX39BF2Z307 99 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 TOR1AO14656 332 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 TLX2O43763 284 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-202ENST00000347401 ZDHHC24Q6UX98 284 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 ZSCAN4Q8NAM6 433 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SIMC1Q8NDZ2 872 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 ANKRD60Q9BZ19 345 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 TRAV6A0A075B6T7 132 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 OR6C6A6NF89 314 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 A8MXE2 369 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 HCRTR2O43614 444 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SOCS5O75159 536 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 MEF2DQ14814 521 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SPHARQ15513 63 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 DECR1Q16698 335 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 UBE2J2Q8N2K1 259 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 BBS10Q8TAM1 723 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 BORCS8Q96FH0 119 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 RNASEH2AO75792 299 aaKnown RBP12.86□□□□□ -0.35
COL6A3-202ENST00000347401 RETP07949 1114 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SLC6A9P48067 706 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 NFATC3Q12968 1075 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SLC36A3Q495N2 470 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 TMEM234Q8WY98 164 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 MKRN2Q9H000 416 aaKnown RBP12.86□□□□□ -0.35
COL6A3-202ENST00000347401 KCNH6Q9H252 994 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 HIF3AQ9Y2N7 669 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 TJP1Q07157 1748 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 J3QRK9 145 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 CSF1P09603 554 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 HLA-EP13747 358 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 KEAP1Q14145 624 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 PDSS1Q5T2R2 415 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 ZER1Q7Z7L7 766 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 ADAMTS19Q8TE59 1207 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 DEDD2Q8WXF8 326 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 FBXL8Q96CD0 374 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 MTERF1Q99551 399 aaKnown RBP12.86□□□□□ -0.35
COL6A3-202ENST00000347401 GNG13Q9P2W3 67 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 GRHPRQ9UBQ7 328 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 WDR45BQ5MNZ6 344 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 LCN8Q6JVE9 175 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 ZNF598Q86UK7 904 aaKnown RBP12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SNX29P2Q8IUI4 249 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SMARCD2Q92925 531 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 CMKLR1Q99788 373 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 UNC13CQ8NB66 2214 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 EFCAB7A8K855 629 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SMIM10L2AP0DMW4 78 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SMIM10L2BP0DMW5 78 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 RAB4AP20338 218 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 DEFA6Q01524 100 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 PEA15Q15121 130 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 ATAD3CQ5T2N8 411 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SPARTQ8N0X7 666 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 BTBD2Q9BX70 525 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 DTLQ9NZJ0 730 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 APODP05090 189 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 PTPRRQ15256 657 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 SF3A2Q15428 464 aaKnown RBP12.86□□□□□ -0.35
COL6A3-202ENST00000347401 UBXN11Q5T124 520 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 COMMD7Q86VX2 200 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 UQCC2Q9BRT2 126 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 TTYH2Q9BSA4 534 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 EBPLQ9BY08 206 aa12.86□□□□□ -0.35
COL6A3-202ENST00000347401 MMP20O60882 483 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 UBBP0CG47 229 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 UBCP0CG48 685 aaKnown RBP12.85□□□□□ -0.35
COL6A3-202ENST00000347401 IFNGR1P15260 489 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 HOXD12P35452 270 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 CASRP41180 1078 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 RPS27AP62979 156 aaKnown RBP12.85□□□□□ -0.35
COL6A3-202ENST00000347401 UBA52P62987 128 aaKnown RBP12.85□□□□□ -0.35
COL6A3-202ENST00000347401 XKR5Q6UX68 686 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 SLC29A4Q7RTT9 530 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 SSX3Q99909 188 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 A8MT66 165 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 F8W036 122 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 HSD17B1P14061 328 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 ART1P52961 327 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 CCINQ13939 588 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 ELOAQ14241 798 aaKnown RBP12.85□□□□□ -0.35
COL6A3-202ENST00000347401 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 EBF4Q9BQW3 602 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 Q9N2J8 555 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 DOCK8Q8NF50 2099 aa12.85□□□□□ -0.35
COL6A3-202ENST00000347401 MTCL1Q9Y4B5 1905 aaKnown RBP12.85□□□□□ -0.35
COL6A3-202ENST00000347401 DICER1Q9UPY3 1922 aaKnown RBP12.85□□□□□ -0.35
COL6A3-202ENST00000347401 JRKO75564 520 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms