RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 DNM1P34Q6PK57 102 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 SPRED2Q7Z698 418 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 PPP1R3BQ86XI6 285 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 AQP12AQ8IXF9 295 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 LRRC25Q8N386 305 aaPredicted RBP15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 AGAP11Q8TF27 550 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 SEC14L1Q92503 715 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 PEX11GQ96HA9 241 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 ARNT2Q9HBZ2 717 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 CTPS2Q9NRF8 586 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 ACTR10Q9NZ32 417 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 SRPK3Q9UPE1 567 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 PDE10AQ9Y233 779 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 PTRH2Q9Y3E5 179 aaKnown RBP15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 FADS3Q9Y5Q0 445 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 A0A1B0GW55 424 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 FEZF1A0PJY2 475 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 SNX4O95219 450 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 DUX4L2P0CJ85 424 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 DUX4L3P0CJ86 424 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 DUX4L4P0CJ87 422 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 DUX4L5P0CJ88 424 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 DUX4L6P0CJ89 424 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 DUX4L7P0CJ90 424 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 GSTM3P21266 225 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 LASP1Q14847 261 aaKnown RBP15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 SYT16Q17RD7 645 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 SLC34A3Q8N130 599 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 GRHL3Q8TE85 626 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 TSPEARQ8WU66 669 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 LGR4Q9BXB1 951 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 ASPNQ9BXN1 380 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 ZNF717Q9BY31 904 aaPredicted RBP15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 CRNNQ9UBG3 495 aaPredicted RBP15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 DUX4Q9UBX2 424 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 IFT52Q9Y366 437 aa15.74■□□□□ 0.11
SMARCA4-201ENST00000344626 SLC9B1P1A6NJY1 282 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 RPLP0P05388 317 aaKnown RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 F3P13726 295 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 ZNF140P52738 457 aaPredicted RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 ARFIP1P53367 373 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 CYP27C1Q4G0S4 372 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 TMCO6Q96DC7 493 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 PCDHGB7Q9Y5F8 929 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 LAMA4Q16363 1823 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 CDK5RAP2Q96SN8 1893 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 GALNT12Q8IXK2 581 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 SNIP1Q8TAD8 396 aaKnown RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 GTPBP3Q969Y2 492 aaKnown RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 RPF2Q9H7B2 306 aaKnown RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 SLAMF7Q9NQ25 335 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 SMPD3Q9NY59 655 aaPredicted RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 STOX2Q9P2F5 926 aaPredicted RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 ZNF624Q9P2J8 865 aaPredicted RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 AP4B1Q9Y6B7 739 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 ASCC3Q8N3C0 2202 aaKnown RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 ZCWPW2A0A1B0GU75 182 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 TMEM221A6NGB7 291 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 M0R296 226 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 EMC8O43402 210 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 DFNA5O60443 496 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 CLEC3AO75596 197 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 AHSA1O95433 338 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 HMGN1P05114 100 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 FOXC1Q12948 553 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 NNATQ16517 81 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 SPANXN4Q5MJ08 99 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 OR5K1Q8NHB7 308 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 F2RL3Q96RI0 385 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 HCN1O60741 890 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 IL3P08700 152 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 ST3GAL3Q11203 375 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 C6orf136Q5SQH8 315 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 METTL2BQ6P1Q9 378 aaKnown RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 SLC2A7Q6PXP3 512 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 ZNF550Q7Z398 422 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 SYVN1Q86TM6 617 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 CCDC116Q8IYX3 515 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 EZH1Q92800 747 aaPredicted RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 NECAB3Q96P71 396 aaPredicted RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 PITHD1Q9GZP4 211 aaPredicted RBP15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 RNF121Q9H920 327 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 KCNK13Q9HB14 408 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 GALNT8Q9NY28 637 aa15.73■□□□□ 0.11
SMARCA4-201ENST00000344626 HYKKA2RU49 373 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 ARHGEF15O94989 841 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 RPS9P46781 194 aaKnown RBP15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 CDKN1CP49918 316 aaPredicted RBP15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 MED22Q15528 200 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 UNC50Q53HI1 259 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 LCTLQ6UWM7 567 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 CCDC103Q8IW40 242 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 NFKBIDQ8NI38 313 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.72■□□□□ 0.118e-8■■□□□ 12.6
SMARCA4-201ENST00000344626 ARRDC2Q8TBH0 407 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 DOK4Q8TEW6 326 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 KAT2AQ92830 837 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 FATE1Q969F0 183 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 EPB41L1Q9H4G0 881 aa15.72■□□□□ 0.11
SMARCA4-201ENST00000344626 CLEC4EQ9ULY5 219 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms