RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 AGFG1P52594 562 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 CDC42P60953 191 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 RRAS2P62070 204 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 GAB1Q13480 694 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 PRAMEF9Q5VWM5 478 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 SPRYD7Q5W111 196 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 LINGO4Q6UY18 593 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 KCTD20Q7Z5Y7 419 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 PHC2Q8IXK0 858 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 STK40Q8N2I9 435 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 TTC9BQ8N6N2 239 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 GALNT11Q8NCW6 608 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 PIH1D2Q8WWB5 315 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 PKMYT1Q99640 499 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 CLN6Q9NWW5 311 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 B3GNT2Q9NY97 397 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 FLRT1Q9NZU1 646 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 TMCC3Q9ULS5 477 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 STUB1Q9UNE7 303 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 SSR3Q9UNL2 185 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 ANKRD66B4E2M5 251 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 CA12O43570 354 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 HPGDSO60760 199 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 STK16O75716 305 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 ACADMP11310 421 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 ETFAP13804 333 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 HOXD9P28356 352 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 PTGER3P43115 390 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 ANKRD54Q6NXT1 300 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 CDH24Q86UP0 819 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 LSRQ86X29 649 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 ADGRG2Q8IZP9 1017 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 DNAJC5GQ8N7S2 189 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 BMPERQ8N8U9 685 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 ZFP41Q8N8Y5 198 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 C9orf43Q8TAL5 461 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 WACQ9BTA9 647 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 CINPQ9BW66 212 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 GTPBP2Q9BX10 602 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 PDFQ9HBH1 243 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 OARD1Q9Y530 152 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 GREB1Q4ZG55 1949 aa12.89□□□□□ -0.35
CCDC88C-201ENST00000331194 IQCMA0A1B0GVH7 501 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ADAMDEC1O15204 470 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 INSIG1O15503 277 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 PDPK1O15530 556 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 AKAP8O43823 692 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TPST2O60704 377 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 SSTR2P30874 369 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 CRATP43155 626 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ABATP80404 500 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 MRPL28Q13084 256 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 MAB21L1Q13394 359 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TRIQKQ629K1 86 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 CNIH2Q6PI25 160 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM181AQ8N9Y4 354 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TMEM145Q8NBT3 493 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF680Q8NEM1 530 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TESCQ96BS2 214 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 METTL2AQ96IZ6 378 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 NTMT1Q9BV86 223 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 SMIM35A0A1B0GVV1 85 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 HYKKA2RU49 373 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ISM1B1AKI9 464 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ALDH1A1P00352 501 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 C1SP09871 688 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ANXA8P13928 327 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 PER3P56645 1201 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 SELENOWP63302 87 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ZMYND11Q15326 602 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ADNP2Q6IQ32 1131 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM122CQ6P4D5 195 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ERICH5Q6P6B1 374 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 B3GLCTQ6Y288 498 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 PLEKHM3Q6ZWE6 761 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 SERPINA9Q86WD7 417 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 PGBD3Q8N328 593 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 GDPD1Q8N9F7 314 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 OR11H4Q8NGC9 324 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 OR52P1PQ8NH57 321 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ARHGAP39Q9C0H5 1083 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 KATNBL1Q9H079 304 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 RBFOX1Q9NWB1 397 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ASIC5Q9NY37 505 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TRPS1Q9UHF7 1281 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 NUP50Q9UKX7 468 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 PADI2Q9Y2J8 665 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 IGLV3-10A0A075B6K4 115 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 C2orf78A6NCI8 922 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 LYRM1O43325 122 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TP53P04637 393 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ODC1P11926 461 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 HOXB6P17509 224 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ITPKAP23677 461 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 CLCN4P51793 760 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 CTBP2P56545 445 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 MFSD13AQ14CX5 517 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 FCN2Q15485 313 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TAF1CQ15572 869 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF284Q2VY69 593 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms