RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MPC1LP0DKB6 136 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 MPIP34949 423 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 CNR2P34972 360 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 CASP3P42574 277 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 RGS6P49758 472 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 APLP1P51693 650 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 TSPAN5P62079 268 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 OXA1LQ15070 435 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 C18orf21Q32NC0 220 aaPredicted RBP18.58■□□□□ 0.56
USP48-201ENST00000308271 ATP6V1C2Q8NEY4 427 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 S100A13Q99584 98 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 RIOK2Q9BVS4 552 aaKnown RBP18.58■□□□□ 0.56
USP48-201ENST00000308271 ZSCAN32Q9NX65 697 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 DUS2Q9NX74 493 aaKnown RBP18.58■□□□□ 0.56
USP48-201ENST00000308271 Q9Y3F1 56 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 SIPA1L3O60292 1781 aaPredicted RBP18.58■□□□□ 0.56
USP48-201ENST00000308271 MEIOCA2RUB1 952 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 DEFA5Q01523 94 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 CPZQ66K79 652 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 HMX1Q9NP08 348 aaPredicted RBP18.58■□□□□ 0.56
USP48-201ENST00000308271 C14orf105Q9NVL8 296 aa18.58■□□□□ 0.56
USP48-201ENST00000308271 RGS17Q9UGC6 210 aaPredicted RBP18.58■□□□□ 0.56
USP48-201ENST00000308271 RCBTB2O95199 551 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 HOXD8P13378 290 aaPredicted RBP18.57■□□□□ 0.56
USP48-201ENST00000308271 ARSAP15289 507 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 ZNF30P17039 623 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 RPL17P18621 184 aaKnown RBP18.57■□□□□ 0.56
USP48-201ENST00000308271 ADRA1AP35348 466 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 BDKRB1P46663 353 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 CCR8P51685 355 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 SLC3A1Q07837 685 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 CCDC115Q96NT0 180 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 OSER1Q9NX31 292 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 LAMB1P07942 1786 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 A0A1B0GTW7 788 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 LRRN3E7EW58 273 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 PRKAR2AP13861 404 aaKnown RBP18.57■□□□□ 0.56
USP48-201ENST00000308271 ZNF24P17028 368 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 PSMD8P48556 350 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 UBXN11Q5T124 520 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 BRAT1Q6PJG6 821 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 GDPD4Q6W3E5 623 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 CLECL1Q8IZS7 167 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 SPAG16Q8N0X2 631 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 RPL3LQ92901 407 aaKnown RBP18.57■□□□□ 0.56
USP48-201ENST00000308271 KHSRPQ92945 711 aaKnown RBP eCLIP18.57■□□□□ 0.562e-7■■■■□ 21
USP48-201ENST00000308271 VMP1Q96GC9 406 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 LRRN3Q9H3W5 708 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 USP3Q9Y6I4 520 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 PTGESO14684 152 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 ITGA10O75578 1167 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 FAM189BP81408 668 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 NFE2L1Q14494 772 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 TRAM2Q15035 370 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 MICAQ29983 383 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 PPP2R2DQ66LE6 453 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 PLAG1Q6DJT9 500 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 PGBD2Q6P3X8 592 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 ZNF783Q6ZMS7 281 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 AGMOQ6ZNB7 445 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 TTLQ8NG68 377 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 ACOT12Q8WYK0 555 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 POU2F3Q9UKI9 436 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 ENPP4Q9Y6X5 453 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 MYH9P35579 1960 aaKnown RBP18.57■□□□□ 0.56
USP48-201ENST00000308271 SNAI1O95863 264 aaPredicted RBP18.57■□□□□ 0.56
USP48-201ENST00000308271 HK1P19367 917 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 YIPF4Q9BSR8 244 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 GON7Q9BXV9 100 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 OR2AG1Q9H205 316 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 ZNF69Q9UC07 566 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 AP1M2Q9Y6Q5 423 aa18.57■□□□□ 0.56
USP48-201ENST00000308271 WASH4PA8MWX3 477 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 NRIP1P48552 1158 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 NPAS4Q8IUM7 802 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 ZNF548Q8NEK5 533 aaPredicted RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 CCDC107Q8WV48 283 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 RAB8BQ92930 207 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 ZNF583Q96ND8 569 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 BHLHE41Q9C0J9 482 aaPredicted RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 RC3H2Q9HBD1 1191 aaKnown RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 PHPT1Q9NRX4 125 aaPredicted RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 MT-ND5P03915 603 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 SELPP16109 830 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 STXBP1P61764 594 aaKnown RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 SELPLGQ14242 412 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 TMIEQ8NEW7 156 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 RPLP0P6Q8NHW5 317 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 GNPDA2Q8TDQ7 276 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 DNAJA4Q8WW22 397 aaPredicted RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 SLC5A11Q8WWX8 675 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 LRR1Q96L50 414 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 SPO11Q9Y5K1 396 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 CDH10Q9Y6N8 788 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 USP54Q70EL1 1684 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 CPNE6O95741 557 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 C21orf33P30042 268 aaPredicted RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 KIF18BQ86Y91 864 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 PLCZ1Q86YW0 608 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 LACC1Q8IV20 430 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms