RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 LPAR4Q99677 370 aa13.53□□□□□ -0.24
HMGN3-201ENST00000275036 RNF32Q9H0A6 362 aa13.53□□□□□ -0.24
HMGN3-201ENST00000275036 TSPYL1Q9H0U9 437 aa13.53□□□□□ -0.24
HMGN3-201ENST00000275036 VPS11Q9H270 941 aa13.53□□□□□ -0.24
HMGN3-201ENST00000275036 MMP25Q9NPA2 562 aa13.53□□□□□ -0.24
HMGN3-201ENST00000275036 AGPAT4Q9NRZ5 378 aa13.53□□□□□ -0.24
HMGN3-201ENST00000275036 CROCCQ5TZA2 2017 aa13.52□□□□□ -0.24
HMGN3-201ENST00000275036 SYCE1LA8MT33 242 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 POC1B-GALNT4F8VUJ3 575 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 PSMD12O00232 456 aaPredicted RBP13.52□□□□□ -0.25
HMGN3-201ENST00000275036 WISP2O76076 250 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 CLDN1O95832 211 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 UQCRHP07919 91 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 INHBAP08476 426 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 MSH2P43246 934 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 TDGF1P3P51864 188 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 RAB38P57729 211 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 AP2B1P63010 937 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 LAPTM5Q13571 262 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 NAA30Q147X3 362 aaPredicted RBP13.52□□□□□ -0.25
HMGN3-201ENST00000275036 EXT1Q16394 746 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 PFKFB4Q16877 469 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 PAGE2BQ5JRK9 111 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 ACER2Q5QJU3 275 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 ABHD17BQ5VST6 288 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 ZNF793Q6ZN11 406 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 CRLF3Q8IUI8 442 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 SCUBE1Q8IWY4 988 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 LAS2Q8IYD9 372 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 BEST3Q8N1M1 668 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 KIF2BQ8N4N8 673 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 TEX9Q8N6V9 391 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 CEP112Q8N8E3 955 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 CSF3RQ99062 836 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 NPLQ9BXD5 320 aaPredicted RBP13.52□□□□□ -0.25
HMGN3-201ENST00000275036 MS4A8Q9BY19 250 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 KCNK13Q9HB14 408 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 PRDM9Q9NQV7 894 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 PRDM7Q9NQW5 492 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 STMN3Q9NZ72 180 aa13.52□□□□□ -0.25
HMGN3-201ENST00000275036 MYO7BQ6PIF6 2116 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 EML6Q6ZMW3 1958 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 TRAV17A0A0B4J275 112 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 CCDC189A1A4V9 331 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 OR5H15A6NDH6 313 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 A8MUA0 341 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 RTCAO00442 366 aaKnown RBP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 B3GALT2O43825 422 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 SH3BGRLO75368 114 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 SIX3O95343 332 aaPredicted RBP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 GFAPP14136 432 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 EDN3P14138 238 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 EPB42P16452 691 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 GCAP28676 217 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 ALDH18A1P54886 795 aaKnown RBP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 LIM2P55344 173 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 PCBP2Q15366 365 aaKnown RBP eCLIP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 HIST2H2ACQ16777 129 aaPredicted RBP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 HIST2H2AA3Q6FI13 130 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 GRHL2Q6ISB3 625 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 MED27Q6P2C8 311 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 TRIM40Q6P9F5 258 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 CYP4X1Q8N118 509 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 FAM47BQ8NA70 645 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 NFAM1Q8NET5 270 aaPredicted RBP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 OR7G3Q8NG95 312 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 ELP5Q8TE02 316 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 SERINC2Q96SA4 455 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 CPSF2Q9P2I0 782 aaKnown RBP13.51□□□□□ -0.25
HMGN3-201ENST00000275036 ZNF180Q9UJW8 692 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 DAPP1Q9UN19 280 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 SLC5A6Q9Y289 635 aa13.51□□□□□ -0.25
HMGN3-201ENST00000275036 A0A087WUV0 522 aaPredicted RBP13.5□□□□□ -0.25
HMGN3-201ENST00000275036 SAGE2PA6NJ88 616 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 TRIM49D1C9J1S8 452 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 CYR61O00622 381 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 TGFB1P01137 390 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 FAM153BP0C7A2 387 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 RHOXF2BP0C7M4 288 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 PCNAP12004 261 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 MST1P26927 711 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 COL8A1P27658 744 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 PPP2R1BP30154 601 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 SERPINB9P50453 376 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 MTTPP55157 894 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 PMP22Q01453 160 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 GTF3C1Q12789 2109 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 FAM153CQ494X1 144 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 CRYBG3Q68DQ2 2970 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 FAM180AQ6UWF9 173 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 GOLGA7Q7Z5G4 137 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 TRIM44Q96DX7 344 aaPredicted RBP13.5□□□□□ -0.25
HMGN3-201ENST00000275036 ZNF354BQ96LW1 612 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 SIGLEC12Q96PQ1 595 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 RHOXF2Q9BQY4 288 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 HES7Q9BYE0 225 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 PRTFDC1Q9NRG1 225 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 OLAHQ9NV23 265 aa13.5□□□□□ -0.25
HMGN3-201ENST00000275036 KCMF1Q9P0J7 381 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms