RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 C1orf226A1L170 272 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 C5orf58C9J3I9 102 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 OR1F1O43749 312 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 CCDC159P0C7I6 412 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 ASMTP46597 345 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 IFITM3Q01628 133 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 COLEC12Q5KU26 742 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 Q6ZNX1 250 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.9■□□□□ 0.14
VPS54-201ENST00000272322 APH1BQ8WW43 257 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 TIFAQ96CG3 184 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 ARSGQ96EG1 525 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 RDH12Q96NR8 316 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 PHOX2BQ99453 314 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 OR51E2Q9H255 320 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 TPK1Q9H3S4 243 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 CXorf36Q9H7Y0 433 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 SLAMF7Q9NQ25 335 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 SACM1LQ9NTJ5 587 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 OR52A4PA6NMU1 304 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 EFCAB9A8MZ26 197 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 TMEM229AB2RXF0 380 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ZNF701M0R085 212 aaPredicted RBP15.89■□□□□ 0.13
VPS54-201ENST00000272322 SLC16A5O15375 505 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 SPINT1O43278 529 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 CKMT1AP12532 417 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ADRB3P13945 408 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 GADD45AP24522 165 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 RYKP34925 604 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 MAPK12P53778 367 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 PNLIPRP1P54315 467 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 PRAMEF14Q5SWL7 426 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 PRAMEF13Q5VWM6 474 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 DPPA4Q7L190 304 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ZNF554Q86TJ5 538 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 SPPL3Q8TCT6 385 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 QRSL1Q9H0R6 528 aaKnown RBP15.89■□□□□ 0.13
VPS54-201ENST00000272322 SLC6A17Q9H1V8 727 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 NDRG4Q9ULP0 352 aaKnown RBP15.89■□□□□ 0.13
VPS54-201ENST00000272322 INSL6Q9Y581 213 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 CLDN25C9JDP6 229 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 INHBBP09529 407 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 JUNBP17275 347 aaPredicted RBP15.89■□□□□ 0.13
VPS54-201ENST00000272322 SEC13P55735 322 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ZNF234Q14588 700 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 SPIN4Q56A73 249 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 FAM109BQ6ICB4 259 aaPredicted RBP15.89■□□□□ 0.13
VPS54-201ENST00000272322 ERICH5Q6P6B1 374 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 VPS35Q96QK1 796 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 FAM129BQ96TA1 746 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 EQTNQ9NQ60 294 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ZNF229Q9UJW7 825 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 PMF1-BGLAPU3KQ54 211 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ARID1BQ8NFD5 2236 aaPredicted RBP15.89■□□□□ 0.13
VPS54-201ENST00000272322 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.89■□□□□ 0.13
VPS54-201ENST00000272322 RXRGP48443 463 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 KRT33BQ14525 404 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 IFI44LQ53G44 452 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ANXA8L1Q5VT79 327 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 LZICQ8WZA0 190 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 Q96MT0 163 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 ZNF556Q9HAH1 456 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 MS4A12Q9NXJ0 267 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 TMEM9Q9P0T7 183 aa15.89■□□□□ 0.13
VPS54-201ENST00000272322 TCF20Q9UGU0 1960 aaKnown RBP15.88■□□□□ 0.13
VPS54-201ENST00000272322 NTN1O95631 604 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 FURINP09958 794 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 TNNI3P19429 210 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 ITIH1P19827 911 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 GPC1P35052 558 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 MVDP53602 400 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 ITGA1P56199 1179 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 ST3GAL4Q11206 333 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 TOP3AQ13472 1001 aaPredicted RBP15.88■□□□□ 0.13
VPS54-201ENST00000272322 DHRS4L2Q6PKH6 230 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 NXPE4Q6UWF7 544 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 ZNF605Q86T29 641 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 C17orf62Q9BQA9 187 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 TAS2R9Q9NYW1 312 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 ZNF282Q9UDV7 671 aaPredicted RBP15.88■□□□□ 0.13
VPS54-201ENST00000272322 ALPK2Q86TB3 2170 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 A0A1W2PS29 197 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 FUOMA2VDF0 154 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 AP2A2O94973 939 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 GADD45GO95257 159 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 BMP4P12644 408 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 GRK5P34947 590 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 CAMK1Q14012 370 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 TIGD6Q17RP2 521 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 ADGRD2Q7Z7M1 963 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 TSPYL5Q86VY4 417 aaPredicted RBP15.88■□□□□ 0.13
VPS54-201ENST00000272322 TRMT61BQ9BVS5 477 aaKnown RBP15.88■□□□□ 0.13
VPS54-201ENST00000272322 KLHL25Q9H0H3 589 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 GPN2Q9H9Y4 310 aaPredicted RBP15.88■□□□□ 0.13
VPS54-201ENST00000272322 FAIMQ9NVQ4 179 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 TEX10Q9NXF1 929 aaPredicted RBP15.88■□□□□ 0.13
VPS54-201ENST00000272322 TBX1O43435 398 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 AIREO43918 545 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 OR10H3O60404 316 aa15.88■□□□□ 0.13
VPS54-201ENST00000272322 JRKO75564 520 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms