RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PRAMEF10O60809 474 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 KCNK2O95069 426 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 STATHP02808 62 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 PPIBP23284 216 aaKnown RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 TIA1P31483 386 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIG1-201ENST00000263274 PTGER1P34995 402 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TGM4P49221 684 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 PRKAG1P54619 331 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 KCNC4Q03721 635 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 MTAPQ13126 283 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 GPNMBQ14956 572 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 PLEKHS1Q5SXH7 462 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 HIST2H2AA3Q6FI13 130 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 FAHD1Q6P587 224 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 SLC46A3Q7Z3Q1 461 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 ADCK2Q7Z695 626 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TMEM175Q9BSA9 504 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TP63Q9H3D4 680 aaPredicted RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 CCL26Q9Y258 94 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 PCDHGB6Q9Y5F9 930 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 SAGE2PA6NJ88 616 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 DSCR3O14972 297 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 INHAP05111 366 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CST5P28325 142 aaPredicted RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 RUNX1T1Q06455 604 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 HSPB3Q12988 150 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 GGTA1PQ4G0N0 100 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 IQCCQ4KMZ1 466 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 COMMD6Q7Z4G1 85 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 MEX3DQ86XN8 651 aaKnown RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 POP5Q969H6 163 aaKnown RBP12.12□□□□□ -0.47
LIG1-201ENST00000263274 ZNF558Q96NG5 402 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 EPYCQ99645 322 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TOR4AQ9NXH8 423 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 ZNF226Q9NYT6 803 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 TRPC4Q9UBN4 977 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 CORO2BQ9UQ03 480 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 KNL1Q8NG31 2342 aa12.12□□□□□ -0.47
LIG1-201ENST00000263274 GBF1Q92538 1859 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 CKAP5Q14008 2032 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 TRAV19A0A0A6YYK7 116 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 LEFTY2O00292 366 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 TPPPO94811 219 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 IFNW1P05000 195 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 BCHEP06276 602 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 MICAQ29983 383 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 UBE2UQ5VVX9 321 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 FIBINQ8TAL6 211 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 BCL7BQ9BQE9 202 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 LINC00597Q9H2U6 94 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 REEP4Q9H6H4 257 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 BACE2Q9Y5Z0 518 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 NUMA1Q14980 2115 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 GFYI3L273 518 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 TEX28O15482 410 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 SGTAO43765 313 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 ATG13O75143 517 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 ALDH1A1P00352 501 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 GASTP01350 101 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 ELFN1P0C7U0 828 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 ITGA2P17301 1181 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 CRYBA2P53672 197 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 CSNK2BP67870 215 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 UBE3AQ05086 875 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 TMEM115Q12893 351 aaPredicted RBP12.11□□□□□ -0.47
LIG1-201ENST00000263274 CCDC85BQ15834 202 aaPredicted RBP12.11□□□□□ -0.47
LIG1-201ENST00000263274 CASP12Q6UXS9 341 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 OLIG3Q7RTU3 272 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 OTULINQ96BN8 352 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 EFHD2Q96C19 240 aaPredicted RBP12.11□□□□□ -0.47
LIG1-201ENST00000263274 HCN4Q9Y3Q4 1203 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 PEX16Q9Y5Y5 336 aa12.11□□□□□ -0.47
LIG1-201ENST00000263274 FADS2P1A8MWK0 482 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 GRM6O15303 877 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 PRMT3O60678 531 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 IGHA2P01877 340 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 SOD2P04179 222 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 MPC1LP0DKB6 136 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 IMPA1P29218 277 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 PIK3CBP42338 1070 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 OR2B6P58173 313 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 TBPL1P62380 186 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 TBCEQ15813 527 aaPredicted RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 DUSP7Q16829 419 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 TPGS2Q68CL5 300 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 METTL2BQ6P1Q9 378 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 CEACAM20Q6UY09 585 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 MMAAQ8IVH4 418 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 CAMKK1Q8N5S9 505 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 RASGEF1AQ8N9B8 481 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 WDR20Q8TBZ3 569 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 FBLIM1Q8WUP2 373 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ZFYVE19Q96K21 471 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 BEX2Q9BXY8 128 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 NLNQ9BYT8 704 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 OR2AG1Q9H205 316 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ABCB9Q9NP78 766 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 TVP23BQ9NYZ1 205 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 CLEC2DQ9UHP7 191 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 SYNDIG1LA6NDD5 238 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms