RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 CD40LGP29965 261 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 PIK3CBP42338 1070 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 TAP2Q03519 686 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 EEF1A2Q05639 463 aaKnown RBP15.71■□□□□ 0.11
HOXD3-201ENST00000249440 MPEG1Q2M385 716 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 FBXO43Q4G163 708 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 PRSS36Q5K4E3 855 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 NXPE4Q6UWF7 544 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 PLEKHG7Q6ZR37 379 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 USP43Q70EL4 1123 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 TRMT11Q7Z4G4 463 aaKnown RBP15.71■□□□□ 0.11
HOXD3-201ENST00000249440 ARMC8Q8IUR7 673 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 STX19Q8N4C7 294 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 OR5AK3PQ8NH89 298 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 WDR48Q8TAF3 677 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 UBE2E3Q969T4 207 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 OTUB2Q96DC9 234 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 COL21A1Q96P44 957 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 PIP5K1AQ99755 562 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 TMEM106CQ9BVX2 250 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 IMPAD1Q9NX62 359 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 ACSL6Q9UKU0 697 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 CCDC88CQ9P219 2028 aa15.71■□□□□ 0.11
HOXD3-201ENST00000249440 PRAMEF25A6NGN4 478 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 KPNA3O00505 521 aaPredicted RBP15.71■□□□□ 0.1
HOXD3-201ENST00000249440 KLK1P06870 262 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 ACRP10323 421 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 HMGA2P52926 109 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 EIF4HQ15056 248 aaKnown RBP15.71■□□□□ 0.1
HOXD3-201ENST00000249440 TRIM74Q86UV6 250 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 TRIM73Q86UV7 250 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF366Q8N895 744 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF675Q8TD23 568 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 OR2AG1Q9H205 316 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 CCDC177Q9NQR7 707 aaPredicted RBP15.71■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF226Q9NYT6 803 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 ANGPT4Q9Y264 503 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 HCN4Q9Y3Q4 1203 aa15.71■□□□□ 0.1
HOXD3-201ENST00000249440 XIRP2A4UGR9 3374 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 RPLP0P05388 317 aaKnown RBP15.7■□□□□ 0.1
HOXD3-201ENST00000249440 CSF2RAP15509 400 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 GABRB1P18505 474 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 XCR1P46094 333 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 VASPP50552 380 aaPredicted RBP15.7■□□□□ 0.1
HOXD3-201ENST00000249440 MEF2AQ02078 507 aaPredicted RBP15.7■□□□□ 0.1
HOXD3-201ENST00000249440 IER5LQ5T953 404 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 IKBIPQ70UQ0 350 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 UBE2Q1Q7Z7E8 422 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 COQ10AQ96MF6 247 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 RAD9AQ99638 391 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 MIEF1Q9NQG6 463 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 ACER3Q9NUN7 267 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 GPR83Q9NYM4 423 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 LRRK1Q38SD2 2015 aa15.7■□□□□ 0.1
HOXD3-201ENST00000249440 J3KTA2 159 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 LILRB5O75023 590 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 ATP6V1G1O75348 118 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 GADD45GO95257 159 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 SOD1P00441 154 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 RHOP08100 348 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 GADD45AP24522 165 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 IRS1P35568 1242 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 SOAT1P35610 550 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 NUDT6P53370 316 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 PCBP3P57721 371 aaKnown RBP15.69■□□□□ 0.1
HOXD3-201ENST00000249440 ST8SIA6P61647 398 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 OLR1P78380 273 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 C1orf53Q5VUE5 145 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 SLC46A3Q7Z3Q1 461 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 SLC30A8Q8IWU4 369 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 LRRC56Q8IYG6 542 aaPredicted RBP15.69■□□□□ 0.1
HOXD3-201ENST00000249440 AMER2Q8N7J2 671 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 VN1R2Q8NFZ6 395 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 OR9Q2Q8NGE9 314 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 SETD7Q8WTS6 366 aaKnown RBP15.69■□□□□ 0.1
HOXD3-201ENST00000249440 PSD2Q9BQI7 771 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 TRIM39Q9HCM9 518 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 DUSP12Q9UNI6 340 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 A3GALT2U3KPV4 340 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 PRAMEF33A0A0G2JMD5 474 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 PCDH17O14917 1159 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 PI15O43692 258 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 PRAMEF10O60809 474 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 ADAM23O75077 832 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 KLHL18O94889 574 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 CCNB2O95067 398 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 STSP08842 583 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 CLTBP09497 229 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 ARAFP10398 606 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 LIMS1P48059 325 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 CDC42P60953 191 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 FPGSQ05932 587 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 ST3GAL4Q11206 333 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 DNASE1L3Q13609 305 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 CYP27C1Q4G0S4 372 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 TUBA3EQ6PEY2 450 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 PSMA8Q8TAA3 256 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 CRELD1Q96HD1 420 aa15.69■□□□□ 0.1
HOXD3-201ENST00000249440 ZNF514Q96K75 400 aaPredicted RBP15.69■□□□□ 0.1
HOXD3-201ENST00000249440 SLC6A16Q9GZN6 736 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms