RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RANBP3LQ86VV4 465 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR2L8Q8NGY9 312 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NFKBIDQ8NI38 313 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TBCKQ8TEA7 893 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR5P2Q8WZ92 322 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MR1Q95460 341 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 KLHDC7BQ96G42 594 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CTRCQ99895 268 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RBM4BQ9BQ04 359 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RBM4Q9BWF3 364 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 STRA6Q9BX79 667 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SLC6A16Q9GZN6 736 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM231Q9H6L2 316 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PARPBPQ9NWS1 579 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 DHDHQ9UQ10 334 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SIT1Q9Y3P8 196 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 N6AMT1Q9Y5N5 214 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ARHGEF40Q8TER5 1519 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 A0A1W2PPW3 197 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 DCDC2BA2VCK2 349 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 BLACEA4D250 179 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MRASO14807 208 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SEPT4O43236 478 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CPSF4O95639 269 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 IFNA1P01562 189 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CCNOP22674 350 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CXCR1P25024 350 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 FKBP2P26885 142 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MAGEB1P43366 347 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TSFMP43897 325 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GPR143P51810 404 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 RAB8AP61006 207 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SPIBQ01892 262 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MSS51Q4VC12 460 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM31Q5JXX7 168 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ATG9BQ674R7 924 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MBLAC2Q68D91 279 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ADGRD2Q7Z7M1 963 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ASB11Q8WXH4 323 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 UFD1Q92890 307 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 PAFAH2Q99487 392 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 DBNDD2Q9BQY9 259 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CCM2LQ9NUG4 571 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ABCD2Q9UBJ2 740 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 SAMHD1Q9Y3Z3 626 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GABARAPH6UMI1 98 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TNFSF12O43508 249 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GABARAPO95166 117 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 VAPBO95292 243 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NPPAP01160 153 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 APOC3P02656 99 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 HNRNPA1P09651 372 aaKnown RBP eCLIP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 LIPCP11150 499 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GABRR2P28476 465 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 GRIA3P42263 894 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 FOXO4P98177 505 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TPGS2Q68CL5 300 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TATDN1Q6P1N9 297 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 DRICH1Q6PGQ1 229 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 AMIGO2Q86SJ2 522 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 OR11L1Q8NGX0 322 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ZFP90Q8TF47 636 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 NR4A3Q92570 626 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF251Q9BRH9 671 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 CDCP1Q9H5V8 836 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TDRD3Q9H7E2 651 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 METTL7AQ9H8H3 244 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 TAS2R1Q9NYW7 299 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 MRPS2Q9Y399 296 aaKnown RBP2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ANKRD36CQ5JPF3 1778 aa2.7□□□□□ -1.98
SCN1A-219ENST00000641575 ERI2A8K979 691 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 M0R233 179 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SGCEO43556 437 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 STK16O75716 305 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RGS9O75916 674 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 C22orf31O95567 290 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 EPHX1P07099 455 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ANXA2P07355 339 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CYP21A2P08686 494 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 NR2F6P10588 404 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CDK2P24941 298 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PSMA1P25786 263 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 G0S2P27469 103 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CD6P30203 668 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 COILP38432 576 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MEOX1P50221 254 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLC12A3P55017 1021 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 EIF3IQ13347 325 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 VASNQ6EMK4 673 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FUT10Q6P4F1 479 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CILP2Q8IUL8 1156 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FOXRED2Q8IWF2 684 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR8S1Q8NH09 359 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SCGB1C1Q8TD33 95 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 STK35Q8TDR2 534 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 UBTD2Q8WUN7 234 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM209Q96SK2 561 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SRMSQ9H3Y6 488 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TLR9Q9NR96 1032 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 NDUFAF1Q9Y375 327 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms