RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF783Q6ZMS7 281 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 ABHD13Q7L211 337 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 SNX29P2Q8IUI4 249 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 OR8H3Q8N146 312 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 GOLM1Q8NBJ4 401 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 TRIB2Q92519 343 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 HAVCR1Q96D42 359 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 SLC29A1Q99808 456 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 XKR8Q9H6D3 395 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 SDR39U1Q9NRG7 319 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-212ENST00000616140 CENPMQ9NSP4 180 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PAK1IP1Q9NWT1 392 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-212ENST00000616140 EBF1Q9UH73 591 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PCDHB11Q9Y5F2 797 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 H0YJX3 145 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 ENTPD6O75354 484 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PFKMP08237 780 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 ITIH1P19827 911 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 CLDN8P56748 225 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 ID2Q02363 134 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 GALNT1Q10472 559 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-212ENST00000616140 GPM6BQ13491 265 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PAMR1Q6UXH9 720 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PTERQ96BW5 349 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 MYRFLQ96LU7 910 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PHOX2BQ99453 314 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 BOCQ9BWV1 1114 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 FAM118AQ9NWS6 357 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 SEC14L4Q9UDX3 406 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PCDHGB1Q9Y5G3 927 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 KDM3BQ7LBC6 1761 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 ITGA10O75578 1167 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 IL3P08700 152 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 S100GP29377 79 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 RBBP4Q09028 425 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 SCRN3Q0VDG4 424 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 C6orf183Q5T699 404 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 ENPP6Q6UWR7 440 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 TMCO2Q7Z6W1 182 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-212ENST00000616140 VTCN1Q7Z7D3 282 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 SLITRK4Q8IW52 837 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PROKR2Q8NFJ6 384 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 MGLLQ99685 303 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 DHRS4Q9BTZ2 278 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 PROM1O43490 865 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 TACSTD2P09758 323 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 GSTT2BP0CG30 244 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 FSHRP23945 695 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 COQ5Q5HYK3 327 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 NIPAL1Q6NVV3 410 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 FBXO42Q6P3S6 717 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 OR52E4Q8NGH9 312 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 COQ8BQ96D53 544 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 PGAP3Q96FM1 320 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 POLMQ9NP87 494 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 POLE4Q9NR33 117 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 PCDHGA7Q9Y5G6 932 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 SPO11Q9Y5K1 396 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF142P52746 1687 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 B4GALT2O60909 372 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 AOC2O75106 756 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 OAZ2O95190 189 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 HK1P19367 917 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 EDNRAP25101 427 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 MAP3K8P41279 467 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 FADDQ13158 208 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 TRAM2Q15035 370 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 GTDC1Q4AE62 458 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 OR51G2Q8NGK0 314 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 L3HYPDHQ96EM0 354 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 IL17FQ96PD4 163 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 ERMAPQ96PL5 475 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 TM9SF2Q99805 663 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 SGIP1Q9BQI5 828 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 LGR4Q9BXB1 951 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 ELOVL2Q9NXB9 296 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 NUP188Q5SRE5 1749 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 HPRP00739 348 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 BMP2P12643 396 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 JUPP14923 745 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 CTSOP43234 321 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 CDKN1CP49918 316 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 AP2S1P53680 142 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 C18orf21Q32NC0 220 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-212ENST00000616140 SLC36A3Q495N2 470 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF805Q5CZA5 627 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 HMGN2P46Q86SG4 172 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 SUN5Q8TC36 379 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 FRMD6Q96NE9 622 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 FEVQ99581 238 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 DPYSL5Q9BPU6 564 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 TUBA1CQ9BQE3 449 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 EHD1Q9H4M9 534 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 IGSF5Q9NSI5 407 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 MTMR10Q9NXD2 777 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 UPB1Q9UBR1 384 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 NENFQ9UMX5 172 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 BAIAP2Q9UQB8 552 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 B4DGG1 531 aa13.49□□□□□ -0.25
CPSF1-212ENST00000616140 RAB36O95755 333 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms