RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 FERD3LQ96RJ6 166 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 MENTQ9BUN1 341 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 IQCGQ9H095 443 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 XKR8Q9H6D3 395 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 ACTR10Q9NZ32 417 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 NUDT4Q9NZJ9 180 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 CPSF2Q9P2I0 782 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 POLG2Q9UHN1 485 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 PLEKHA6Q9Y2H5 1048 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 COLEC10Q9Y6Z7 277 aa13.15□□□□□ -0.3
SHKBP1-218ENST00000598907 RTTNQ86VV8 2226 aa13.15□□□□□ -0.31
SHKBP1-218ENST00000598907 C2orf74A8MZ97 194 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 UBXN8O00124 270 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 DLX3O60479 287 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 WDPCPO95876 746 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 HPP00738 406 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ERGP11308 486 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 CPA3P15088 417 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ACPPP15309 386 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ABOP16442 354 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 SOX11P35716 441 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ADAM8P78325 824 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ZYG11AQ6WRX3 759 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 TTLL10Q6ZVT0 673 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 PRSS58Q8IYP2 241 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ARMC2Q8NEN0 867 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 OR9A1PQ8NGU1 263 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 RHBDF1Q96CC6 855 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 VPS50Q96JG6 964 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 CCDC138Q96M89 665 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 PKP4Q99569 1192 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 CRB3Q9BUF7 120 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 TRIM54Q9BYV2 358 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 DNAJB12Q9NXW2 375 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 COQ3Q9NZJ6 369 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ST6GALNAC2Q9UJ37 374 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 MID2Q9UJV3 735 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 PTBP2Q9UKA9 531 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 TMCO1Q9UM00 188 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 ZNF835Q9Y2P0 537 aa13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 MRPS2Q9Y399 296 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-218ENST00000598907 AKAP6Q13023 2319 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 COL6A5A8TX70 2615 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 NBEAL1Q6ZS30 2694 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 KRT87PA6NCN2 255 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 A8MT66 165 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 CELA2AP08217 269 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 HIST1H2AGP0C0S8 130 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 IGFBP2P18065 325 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 HIST1H2ADP20671 130 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 ATP5F1P24539 256 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 GGT5P36269 586 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 GABRA4P48169 554 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 SERPINB4P48594 390 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 HSF1Q00613 529 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 PCLAFQ15004 111 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 CES4AQ5XG92 561 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 SULT1C3Q6IMI6 304 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 TTC23LQ6PF05 361 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 SPESP1Q6UW49 350 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 Q6ZPB1 254 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 FRA10AC1Q70Z53 315 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 COX15Q7KZN9 410 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 OVCH1Q7RTY7 1134 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 KLHDC8AQ8IYD2 350 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 LRRC56Q8IYG6 542 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 PSMF1Q92530 271 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 HAS2Q92819 552 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 FBXL8Q96CD0 374 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 HIST1H2AHQ96KK5 128 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 GPR137Q96N19 417 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 HIST1H2AJQ99878 128 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 SELENOSQ9BQE4 189 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 H2AFJQ9BTM1 129 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 HGH1Q9BTY7 390 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 WDR54Q9H977 334 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 CNOT10Q9H9A5 744 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 OXSMQ9NWU1 459 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 UTP6Q9NYH9 597 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 NKIRAS1Q9NYS0 192 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 SPATA7Q9P0W8 599 aa13.13□□□□□ -0.31
SHKBP1-218ENST00000598907 CPAMD8Q8IZJ3 1885 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 VPS13CQ709C8 3753 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 A0A1B0GX78 115 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 SUPT3HB4E1H0 165 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 NPIPA5E9PKD4 350 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 STX16-NPEPL1H3BU86 382 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 STX16O14662 325 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 BIRC5O15392 142 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 TAPBPO15533 448 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 SUPT3HO75486 399 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 BPGMP07738 259 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 ANXA5P08758 320 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 PRR35P0CG20 571 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 MYL2P10916 166 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 CHN1P15882 459 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 TAC1P20366 129 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 DNASE1P24855 282 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 PCSK6P29122 969 aa13.12□□□□□ -0.31
SHKBP1-218ENST00000598907 IMPA1P29218 277 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms