RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 DPH2Q9BQC3 489 aaPredicted RBP10□□□□□ -0.81
LIG1-210ENST00000596332 MRPL1Q9BYD6 325 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 NLNQ9BYT8 704 aa10□□□□□ -0.81
LIG1-210ENST00000596332 DPH1Q9BZG8 443 aa10□□□□□ -0.81
LIG1-210ENST00000596332 TGIF2Q9GZN2 237 aa10□□□□□ -0.81
LIG1-210ENST00000596332 DDX31Q9H8H2 851 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 PNPOQ9NVS9 261 aa10□□□□□ -0.81
LIG1-210ENST00000596332 SIRT5Q9NXA8 310 aa10□□□□□ -0.81
LIG1-210ENST00000596332 ADGRE2Q9UHX3 823 aa10□□□□□ -0.81
LIG1-210ENST00000596332 FARSAQ9Y285 508 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 ANKRD11Q6UB99 2663 aaPredicted RBP10□□□□□ -0.81
LIG1-210ENST00000596332 ITPR1Q14643 2758 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 URB1O60287 2271 aaKnown RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 DSPP15924 2871 aaKnown RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 LOC400499M0QZD8 3231 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 A0A0A6YYD5 115 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 SRRM3A6NNA2 597 aaPredicted RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 WASHC1A8K0Z3 465 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 TMEM114B3SHH9 223 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 FAM227AF5H4B4 570 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 TGFBR3LH3BV60 316 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 CYR61O00622 381 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 AZIN1O14977 448 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ERI3O43414 337 aaKnown RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 TMPRSS11DO60235 418 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ULK1O75385 1050 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 BMP10O95393 424 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ALBP02768 609 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 KLK3P07288 261 aaPredicted RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 UROSP10746 265 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 GRK2P25098 689 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 CERS1P27544 350 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ARFIP1P53367 373 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 STXBP1P61764 594 aaKnown RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 HMGCS1Q01581 520 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ZNF33BQ06732 778 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 RGS1Q08116 209 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 STX3Q13277 289 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 DNASE1L3Q13609 305 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ERV3-1Q14264 604 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 HERC3Q15034 1050 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 NCF4Q15080 339 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 TMEM35AQ53FP2 167 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 XKR7Q5GH72 579 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 CFAP157Q5JU67 520 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 C10orf62Q5T681 223 aaPredicted RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 HHATQ5VTY9 493 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 OR4C11Q6IEV9 310 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 MAVSQ7Z434 540 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 CLYBLQ8N0X4 340 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 METTL4Q8N3J2 472 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 TBC1D19Q8N5T2 526 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ENDOVQ8N8Q3 282 aaKnown RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 ACOT4Q8N9L9 421 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 OR51Q1Q8NH59 317 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIG1-210ENST00000596332 STT3BQ8TCJ2 826 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 KCNE4Q8WWG9 221 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 CKAP2Q8WWK9 683 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 SELENOMQ8WWX9 145 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ZCCHC14Q8WYQ9 949 aaKnown RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 FKBP10Q96AY3 582 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 MMABQ96EY8 250 aaPredicted RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 APIPQ96GX9 242 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 CRELD1Q96HD1 420 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 MAGEB10Q96LZ2 347 aaPredicted RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 C17orf62Q9BQA9 187 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 TBCDQ9BTW9 1192 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 MANSC1Q9H8J5 431 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 BRF2Q9HAW0 419 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 TXLNGQ9NUQ3 528 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 IRAK4Q9NWZ3 460 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 NDOR1Q9UHB4 597 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ZMIZ1Q9ULJ6 1067 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 SNX6Q9UNH7 406 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 STK38LQ9Y2H1 464 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.99□□□□□ -0.81
LIG1-210ENST00000596332 MAP4K5Q9Y4K4 846 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ASB4Q9Y574 426 aa9.99□□□□□ -0.81
LIG1-210ENST00000596332 ACACAQ13085 2346 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 TMEM8BA6NDV4 472 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 C21orf140B9A014 251 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 NKX2-8O15522 239 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 KLK10O43240 276 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 SEMA3DO95025 777 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 GBAP04062 536 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 ZGLP1P0C6A0 271 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 CCNYL3P0C7X3 344 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 NR1D1P20393 614 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 HIST1H1TP22492 207 aaPredicted RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 PRPH2P23942 346 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 PTPN4P29074 926 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 DLSTP36957 453 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 LIM2P55344 173 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 ASPHQ12797 758 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 CSTF3Q12996 717 aaKnown RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 IFT88Q13099 833 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 IL10RAQ13651 578 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 NDUFA9Q16795 377 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 PRSS53Q2L4Q9 553 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms