RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 OR2L5Q8NG80 312 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 PPP1R14CQ8TAE6 165 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 RAB3IL1Q8TBN0 382 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 WDR20Q8TBZ3 569 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 AGAP11Q8TF27 550 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 CCT6BQ92526 530 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 ARL8AQ96BM9 186 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 MS4A8Q9BY19 250 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 REXO4Q9GZR2 422 aaKnown RBP19.53■□□□□ 0.72
VPS53-210ENST00000571456 SLC26A1Q9H2B4 701 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 WDR54Q9H977 334 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 BRF2Q9HAW0 419 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 PCNAP12004 261 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 TCN2P20062 427 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 HMOX2P30519 316 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 MC1RQ01726 317 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 CUL3Q13618 768 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 RCN2Q14257 317 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 CRTC2Q53ET0 693 aaPredicted RBP19.52■□□□□ 0.72
VPS53-210ENST00000571456 LETMD1Q6P1Q0 360 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 VASH2Q86V25 355 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 KCT2Q8NC54 265 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 HUS1BQ8NHY5 278 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 FAR2Q96K12 515 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 SERPINI1Q99574 410 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 GPN2Q9H9Y4 310 aaPredicted RBP19.52■□□□□ 0.72
VPS53-210ENST00000571456 PRM3Q9NNZ6 103 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 MID1IP1Q9NPA3 183 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 IFT80Q9P2H3 777 aaPredicted RBP19.52■□□□□ 0.72
VPS53-210ENST00000571456 MAP4K5Q9Y4K4 846 aa19.52■□□□□ 0.72
VPS53-210ENST00000571456 CRYBG3Q68DQ2 2970 aa19.52■□□□□ 0.71
VPS53-210ENST00000571456 SERTM1A2A2V5 107 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 TMEM114B3SHH9 223 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 DYNC1I1O14576 645 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 SASH3O75995 380 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 OR4F21O95013 312 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 SEMA3DO95025 777 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 CYC1P08574 325 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 SMIM10L1P0DMW3 83 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 HYAL2Q12891 473 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 NCF4Q15080 339 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 HSP90B2PQ58FF3 399 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 OVCH1Q7RTY7 1134 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 GBP7Q8N8V2 638 aaPredicted RBP19.51■□□□□ 0.71
VPS53-210ENST00000571456 OR6Y1Q8NGX8 325 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 METTL6Q8TCB7 284 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 UTP15Q8TED0 518 aaKnown RBP19.51■□□□□ 0.71
VPS53-210ENST00000571456 MS4A6EQ96DS6 147 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 SMIM10Q96HG1 83 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 KCNC2Q96PR1 638 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 CDK15Q96Q40 435 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 TBCDQ9BTW9 1192 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 NPLQ9BXD5 320 aaPredicted RBP19.51■□□□□ 0.71
VPS53-210ENST00000571456 CHST8Q9H2A9 424 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 MKKSQ9NPJ1 570 aaPredicted RBP19.51■□□□□ 0.71
VPS53-210ENST00000571456 MED4Q9NPJ6 270 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 DMRT3Q9NQL9 472 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 ZNF446Q9NWS9 450 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 ANAPC2Q9UJX6 822 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 CELSR2Q9HCU4 2923 aa19.51■□□□□ 0.71
VPS53-210ENST00000571456 FBN2P35556 2912 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 FOXS1O43638 330 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 GALR3O60755 368 aaPredicted RBP19.5■□□□□ 0.71
VPS53-210ENST00000571456 ULK1O75385 1050 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 CRCPO75575 148 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 SERPINE1P05121 402 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 CAPN1P07384 714 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 NEFHP12036 1026 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 WT1P19544 449 aaPredicted RBP19.5■□□□□ 0.71
VPS53-210ENST00000571456 ITGAXP20702 1163 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 FBLP22087 321 aaKnown RBP19.5■□□□□ 0.71
VPS53-210ENST00000571456 DLSTP36957 453 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 OCA2Q04671 838 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 DNASE1L3Q13609 305 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 MPP2Q14168 576 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 TTMPQ5BVD1 217 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 TOR1AIP1Q5JTV8 583 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 DEPDC1Q5TB30 811 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 C1orf189Q5VU69 101 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 KHDRBS2Q5VWX1 349 aaKnown RBP19.5■□□□□ 0.71
VPS53-210ENST00000571456 RNF165Q6ZSG1 346 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 VN1R5Q7Z5H4 357 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 SYVN1Q86TM6 617 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 ADAMTS18Q8TE60 1221 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 NACC2Q96BF6 587 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 MOCOSQ96EN8 888 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 MMABQ96EY8 250 aaPredicted RBP19.5■□□□□ 0.71
VPS53-210ENST00000571456 SLC45A3Q96JT2 553 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 C14orf105Q9NVL8 296 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 AHSPQ9NZD4 102 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 ZNF282Q9UDV7 671 aaPredicted RBP19.5■□□□□ 0.71
VPS53-210ENST00000571456 PLEKHB1Q9UF11 243 aaPredicted RBP19.5■□□□□ 0.71
VPS53-210ENST00000571456 ZNF225Q9UK10 706 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 CROTQ9UKG9 612 aa19.5■□□□□ 0.71
VPS53-210ENST00000571456 IGLV3-12A0A075B6K2 115 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 PPP6CO00743 305 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 PCDH17O14917 1159 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 ERI3O43414 337 aaKnown RBP19.49■□□□□ 0.71
VPS53-210ENST00000571456 CHEK2O96017 543 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 FGF4P08620 206 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms