RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ZNF528Q3MIS6 628 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 FAM171A1Q5VUB5 890 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 EIF3MQ7L2H7 374 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 GATAD2BQ8WXI9 593 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 APBB2Q92870 758 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SLC30A3Q99726 388 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 GATA5Q9BWX5 397 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 SLC29A3Q9BZD2 475 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 NKX6-2Q9C056 277 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 OPN3Q9H1Y3 402 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 LYARQ9NX58 379 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 KCMF1Q9P0J7 381 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 PISDQ9UG56 409 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 LOC100130705A0A1B0GUX0 176 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 FAM159BA6NKW6 160 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SULT1C2O00338 296 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 NME4O00746 187 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 GPIP06744 558 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CYP4B1P13584 511 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 FOSL2P15408 326 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ARSBP15848 533 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TGFBR2P37173 567 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 PSMD8P48556 350 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CLCN5P51795 746 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CAP1Q01518 475 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ARL13AQ5H913 290 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 SLC35F1Q5T1Q4 408 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 RYBPQ8N488 228 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 TRPV1Q8NER1 839 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 OR11H4Q8NGC9 324 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ELP5Q8TE02 316 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 AGAP2Q99490 1192 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 GSDMCQ9BYG8 508 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ALX4Q9H161 411 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 ABCG8Q9H221 673 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TASP1Q9H6P5 420 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ZNF408Q9H9D4 720 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 UNKLQ9H9P5 680 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 ZFP57Q9NU63 452 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 EIF2B4Q9UI10 523 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 ZDHHC2Q9UIJ5 367 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 MID2Q9UJV3 735 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SLC39A10Q9ULF5 831 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 NEU3Q9UQ49 428 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 DLGAP4Q9Y2H0 992 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CRYL1Q9Y2S2 319 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 A3GALT2U3KPV4 340 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 HHLA1C9JL84 531 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 C9JVG2 144 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 KCNK1O00180 336 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 MFSD11O43934 449 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TRIM13O60858 407 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 LILRB3O75022 631 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TRIM3O75382 744 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 MED6O75586 246 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 F9P00740 461 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 LTFP02788 710 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ALDOAP04075 364 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 PTBP1P26599 531 aaKnown RBP eCLIP10.44□□□□□ -0.74
CLK3-226ENST00000569406 CD86P42081 329 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TGM4P49221 684 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CARD18P57730 90 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CRYZQ08257 329 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 SEMA5AQ13591 1074 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CLINT1Q14677 625 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SMCO1Q147U7 214 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 FCN2Q15485 313 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SMN1Q16637 294 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 TIGD6Q17RP2 521 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 PYDC2Q56P42 97 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 AFTPHQ6ULP2 937 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CD300LGQ6UXG3 332 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CLEC20AQ6ZU45 233 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 RAB44Q7Z6P3 723 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 TGIF2LXQ8IUE1 241 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ITFG1Q8TB96 612 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ADAMTS19Q8TE59 1207 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ZNF419Q96HQ0 510 aaPredicted RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 OR5M11Q96RB7 305 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 NPY6RQ99463 290 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CCM2Q9BSQ5 444 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 NTMT1Q9BV86 223 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 KCNH6Q9H252 994 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 MIOSQ9NXC5 875 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SRRDQ9UH36 339 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CA5BQ9Y2D0 317 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TTC3P53804 2025 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SHROOM3Q8TF72 1996 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 NEDD8-MDP1E9PL57 170 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 OIP5O43482 229 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 KHDRBS3O75525 346 aaKnown RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 RPLP0P05388 317 aaKnown RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 MGAT1P26572 445 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 MATKP42679 507 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 SULT1E1P49888 294 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 BCAT1P54687 386 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 FADDQ13158 208 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 OLIG2Q13516 323 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 GPR155Q7Z3F1 870 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 ASPGQ86U10 573 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms