RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NSFP46459 744 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 SLC11A2P49281 568 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 VEGFCP49767 419 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CCR5P51681 352 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 NDUFA8P51970 172 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 KPNA2P52292 529 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 NDST2P52849 883 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PRKAG1P54619 331 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PRRX1P54821 245 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TMBIM6P55061 237 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MLLT10P55197 1068 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PRMT2P55345 433 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PSPHP78330 225 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 RBP5P82980 135 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PPARDQ03181 441 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TCF15Q12870 199 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ILF2Q12905 390 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 SLC13A2Q13183 592 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SEMA3BQ13214 749 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SLC39A6Q13433 755 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ALKBH1Q13686 389 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 PDK2Q15119 407 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SEC23BQ15437 767 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CCDC142Q17RM4 750 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 KIF19Q2TAC6 998 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TMEM119Q4V9L6 283 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TAF1BQ53T94 588 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 XKR4Q5GH76 650 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 KIAA1755Q5JYT7 1200 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CCNYL2Q5T2Q4 361 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PDZK1Q5T2W1 519 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 FAM102BQ5T8I3 360 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 RIPPLY2Q5TAB7 128 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 DDI2Q5TDH0 399 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MLIPQ5VWP3 458 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CXorf57Q6NSI4 855 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 C11orf63Q6NUN7 778 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 RPUSD3Q6P087 351 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 NOTUMQ6P988 496 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 DARS2Q6PI48 645 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 VSTM1Q6UX27 236 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ZNF782Q6ZMW2 699 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 KIAA0408Q6ZU52 694 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 BBS12Q6ZW61 710 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ZNF551Q7Z340 670 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 TRMT11Q7Z4G4 463 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 DCXRQ7Z4W1 244 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 NOXA1Q86UR1 476 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SLC22A16Q86VW1 577 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 COMMD7Q86VX2 200 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CARM1Q86X55 608 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CATSPER3Q86XQ3 398 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SLC13A5Q86YT5 568 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 CCDC60Q8IWA6 550 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 MAML2Q8IZL2 1156 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 OR8H3Q8N146 312 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 METTL4Q8N3J2 472 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ZCCHC7Q8N3Z6 543 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 OR2L5Q8NG80 312 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OR4M1Q8NGD0 313 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OR5M1Q8NGP8 315 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OR6Q1Q8NGQ2 317 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ST7LQ8TDW4 575 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ELP5Q8TE02 316 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 GJA10Q969M2 543 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 KIAA1191Q96A73 305 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 HMCESQ96FZ2 354 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SH3YL1Q96HL8 342 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 ST6GAL2Q96JF0 529 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MRGPRX1Q96LB2 322 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ZNF597Q96LX8 424 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PPP3R2Q96LZ3 170 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 KLHL15Q96M94 604 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TRNT1Q96Q11 434 aaKnown RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 SORT1Q99523 831 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 ZBTB18Q99592 522 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 NPAS1Q99742 590 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PTDSS2Q9BVG9 487 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MND1Q9BWT6 205 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PARD6GQ9BYG4 376 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 MS4A7Q9GZW8 240 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 C1orf21Q9H246 121 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SPNS1Q9H2V7 528 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 OPA3Q9H6K4 179 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 NIPAL2Q9H841 368 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 GPN2Q9H9Y4 310 aaPredicted RBP3.13□□□□□ -1.91
VPS35-208ENST00000568612 EFCAB1Q9HAE3 211 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 CYP3A43Q9HB55 503 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 GLOD4Q9HC38 313 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PCDH9Q9HC56 1237 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 MLXIPLQ9NP71 852 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 NT5MQ9NPB1 228 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 IL26Q9NPH9 171 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 EQTNQ9NQ60 294 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 FBXO8Q9NRD0 319 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 SNX15Q9NRS6 342 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 PLSCR3Q9NRY6 295 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 IMPAD1Q9NX62 359 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TAS2R10Q9NYW0 307 aa3.13□□□□□ -1.91
VPS35-208ENST00000568612 TREM2Q9NZC2 230 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms