RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SEMA3DO95025 777 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 CPNE6O95741 557 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 OPN1SWP03999 348 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 TNFRSF4P43489 277 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 RPS21P63220 83 aaKnown RBP19.37■□□□□ 0.69
CLN3-230ENST00000568076 EEF1A2Q05639 463 aaKnown RBP19.37■□□□□ 0.69
CLN3-230ENST00000568076 NEDD8Q15843 81 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 TMEM196Q5HYL7 178 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 GCNT6Q5T4J0 391 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 RNF130Q86XS8 419 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 OR14C36Q8NHC7 312 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 GANCQ8TET4 914 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 DOHHQ9BU89 302 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 PCBD2Q9H0N5 130 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 XKR8Q9H6D3 395 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 LHX9Q9NQ69 397 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 ADPRHL2Q9NX46 363 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 AHSPQ9NZD4 102 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 PDP1Q9P0J1 537 aaPredicted RBP19.37■□□□□ 0.69
CLN3-230ENST00000568076 ORC6Q9Y5N6 252 aa19.37■□□□□ 0.69
CLN3-230ENST00000568076 KLHL33A6NCF5 533 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 BCKDKO14874 412 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 PLRG1O43660 514 aaKnown RBP19.36■□□□□ 0.69
CLN3-230ENST00000568076 CXCR2P25025 360 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 IGFALSP35858 605 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 ARHGDIAP52565 204 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 SGCGQ13326 291 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 DYNC1I2Q13409 638 aaKnown RBP19.36■□□□□ 0.69
CLN3-230ENST00000568076 RAPSNQ13702 412 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 ERI1Q8IV48 349 aaKnown RBP19.36■□□□□ 0.69
CLN3-230ENST00000568076 FAM131CQ96AQ9 280 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 TM4SF18Q96CE8 201 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 SLC17A9Q9BYT1 436 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 ABCG4Q9H172 646 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 S1PR5Q9H228 398 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 FZD3Q9NPG1 666 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 SLAMF7Q9NQ25 335 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 MIEF1Q9NQG6 463 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 CLEC1BQ9P126 229 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 ICKQ9UPZ9 632 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 MAP4K5Q9Y4K4 846 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 AP1M2Q9Y6Q5 423 aa19.36■□□□□ 0.69
CLN3-230ENST00000568076 IGKV1-8A0A0C4DH67 115 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 LCMT2O60294 686 aaKnown RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 DDCP20711 480 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 RYKP34925 604 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 SELENOWP63302 87 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 FADDQ13158 208 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 SCARB2Q14108 478 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 CLCA4Q14CN2 919 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 XAF1Q6GPH4 301 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 NFKBIDQ8NI38 313 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 FBLIM1Q8WUP2 373 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 CAMK1GQ96NX5 476 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 MYOCQ99972 504 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 TIMM29Q9BSF4 260 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 BTBD1Q9H0C5 482 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 TMEM38AQ9H6F2 299 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 CXorf36Q9H7Y0 433 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 SLC28A3Q9HAS3 691 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 IMP3Q9NV31 184 aaKnown RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 THUMPD1Q9NXG2 353 aaKnown RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 SLC17A4Q9Y2C5 497 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 PADI2Q9Y2J8 665 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 DGKBQ9Y6T7 804 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 PLXND1Q9Y4D7 1925 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 PRR19A6NJB7 356 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 DPM1O60762 260 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 RNGTTO60942 597 aaKnown RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 HTR1AP08908 422 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 CYP4B1P13584 511 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 TNFRSF1BP20333 461 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 MAT2AP31153 395 aaKnown RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 CLK3P49761 638 aaKnown RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 MAPK12P53778 367 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 CSNK1G2P78368 415 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 DLX2Q07687 328 aaPredicted RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 BROXQ5VW32 411 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 KIAA1161Q6NSJ0 714 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 PLD3Q8IV08 490 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 TAMM41Q96BW9 452 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 C12orf43Q96C57 262 aaKnown RBP19.35■□□□□ 0.69
CLN3-230ENST00000568076 NRBF2Q96F24 287 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 RIBC2Q9H4K1 309 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 EPS8L2Q9H6S3 715 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 NT5DC2Q9H857 520 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 REEP1Q9H902 201 aa19.35■□□□□ 0.69
CLN3-230ENST00000568076 ZNF701M0R085 212 aaPredicted RBP19.34■□□□□ 0.69
CLN3-230ENST00000568076 ABCB7O75027 752 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 ADAM23O75077 832 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 JUNBP17275 347 aaPredicted RBP19.34■□□□□ 0.69
CLN3-230ENST00000568076 SOAT1P35610 550 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 CHI3L1P36222 383 aaPredicted RBP19.34■□□□□ 0.69
CLN3-230ENST00000568076 IL1RL1Q01638 556 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 RBBP4Q09028 425 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 IL18R1Q13478 541 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 SIM2Q14190 667 aaPredicted RBP19.34■□□□□ 0.69
CLN3-230ENST00000568076 SKIV2LQ15477 1246 aaKnown RBP19.34■□□□□ 0.69
CLN3-230ENST00000568076 UBE3DQ7Z6J8 389 aa19.34■□□□□ 0.69
CLN3-230ENST00000568076 GABRG3Q99928 467 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms