RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 COX15Q7KZN9 410 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 PRSS41Q7RTY9 318 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 NUDT13Q86X67 352 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 AMER3Q8N944 861 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 ANKRD42Q8N9B4 389 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 STT3BQ8TCJ2 826 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.53□□□□□ -0.56
SF3B3-208ENST00000567250 CATSPER2Q96P56 530 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 IP6K3Q96PC2 410 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 OR1F2PQ96R84 312 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 SERINC2Q96SA4 455 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 NPLQ9BXD5 320 aaPredicted RBP11.53□□□□□ -0.56
SF3B3-208ENST00000567250 AKIRIN1Q9H9L7 192 aaPredicted RBP11.53□□□□□ -0.56
SF3B3-208ENST00000567250 ACSS2Q9NR19 701 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 AHSPQ9NZD4 102 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 HCN3Q9P1Z3 774 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 CTSFQ9UBX1 484 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 IL17BQ9UHF5 180 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 PTRH2Q9Y3E5 179 aaKnown RBP11.53□□□□□ -0.56
SF3B3-208ENST00000567250 SPACA6W5XKT8 324 aa11.53□□□□□ -0.56
SF3B3-208ENST00000567250 DSPP15924 2871 aaKnown RBP11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SYNDIG1LA6NDD5 238 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 ZNF860A6NHJ4 632 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 MAGEB17A8MXT2 336 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 TMEM114B3SHH9 223 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 PPP6CO00743 305 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 TGFB1P01137 390 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SERPINE1P05121 402 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 ZGLP1P0C6A0 271 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 DHRS4L1P0CG22 281 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SMIM10L1P0DMW3 83 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 UROSP10746 265 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 RNH1P13489 461 aaKnown RBP11.52□□□□□ -0.57
SF3B3-208ENST00000567250 F8A1P23610 371 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 GRK2P25098 689 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 XCR1P46094 333 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 BTN3A2P78410 334 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 UGT8Q16880 541 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 HSP90B2PQ58FF3 399 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 DEPDC1Q5TB30 811 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 ABHD17CQ6PCB6 329 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 ZCCHC23Q6ZST2 131 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 PAGE2Q7Z2X7 111 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 CUZD1Q86UP6 607 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 PDSS2Q86YH6 399 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 TRIM42Q8IWZ5 723 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 DTWD1Q8N5C7 304 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 GBP7Q8N8V2 638 aaPredicted RBP11.52□□□□□ -0.57
SF3B3-208ENST00000567250 OR51Q1Q8NH59 317 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 RAB3IL1Q8TBN0 382 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SNRNP27Q8WVK2 155 aaKnown RBP11.52□□□□□ -0.57
SF3B3-208ENST00000567250 RGMAQ96B86 450 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 NACC2Q96BF6 587 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SMIM10Q96HG1 83 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SPSB2Q99619 263 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 PAIP2Q9BPZ3 127 aaKnown RBP11.52□□□□□ -0.57
SF3B3-208ENST00000567250 TGIF2Q9GZN2 237 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 OR51B5Q9H339 312 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 KLHL31Q9H511 634 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SEMA3GQ9NS98 782 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SLC22A11Q9NSA0 550 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 ZNF225Q9UK10 706 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 MRPS33Q9Y291 106 aaKnown RBP11.52□□□□□ -0.57
SF3B3-208ENST00000567250 MRPS18BQ9Y676 258 aaKnown RBP11.52□□□□□ -0.57
SF3B3-208ENST00000567250 SEC16AO15027 2179 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 CCDC88CQ9P219 2028 aa11.52□□□□□ -0.57
SF3B3-208ENST00000567250 ITPR1Q14643 2758 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 A0A1B0GTL3 188 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 VSTM2BA6NLU5 285 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 MANBAO00462 879 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 KLF7O75840 302 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 SCELO95171 688 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 HSPA4LO95757 839 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 TBX6O95947 436 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 PDYNP01213 254 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 CERS1P27544 350 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 NEK2P51955 445 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 RPS18P62269 152 aaKnown RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 MAT1AQ00266 395 aaKnown RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 KLC1Q07866 573 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 SRSF6Q13247 344 aaKnown RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 COL9A2Q14055 689 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 SSPNQ14714 243 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 CHI3L2Q15782 390 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 TTMPQ5BVD1 217 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 MFSD4BQ5TF39 518 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 MGARPQ8TDB4 240 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 THAP4Q8WY91 577 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 ARL8AQ96BM9 186 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 MTFMTQ96DP5 389 aaKnown RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 QRFPRQ96P65 431 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 F2RL3Q96RI0 385 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 CRB3Q9BUF7 120 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 AICDAQ9GZX7 198 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 SOX17Q9H6I2 414 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-208ENST00000567250 CPNE5Q9HCH3 593 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 MS4A12Q9NXJ0 267 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 SLC12A4Q9UP95 1085 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 POLHQ9Y253 713 aa11.51□□□□□ -0.57
SF3B3-208ENST00000567250 PKD1L2Q7Z442 2459 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms