RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MID1IP1Q9NPA3 183 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 KCNK9Q9NPC2 374 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ARGLU1Q9NWB6 273 aaPredicted RBP18.49■□□□□ 0.55
CLN3-225ENST00000566824 TIMM22Q9Y584 194 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 ACTL7BQ9Y614 415 aa18.49■□□□□ 0.55
CLN3-225ENST00000566824 FAM227AF5H4B4 570 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 TRIM13O60858 407 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 BMP10O95393 424 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 PDYNP01213 254 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 BPGMP07738 259 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 CERS1P27544 350 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 XCR1P46094 333 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 DEFB109BQ30KR1 87 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 TTC19Q6DKK2 380 aaPredicted RBP18.48■□□□□ 0.55
CLN3-225ENST00000566824 HDXQ7Z353 690 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 GPR155Q7Z3F1 870 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 CA13Q8N1Q1 262 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 MIEF2Q96C03 454 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 CMTM7Q96FZ5 175 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 PRM3Q9NNZ6 103 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 MKKSQ9NPJ1 570 aaPredicted RBP18.48■□□□□ 0.55
CLN3-225ENST00000566824 MID2Q9UJV3 735 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 PADI2Q9Y2J8 665 aa18.48■□□□□ 0.55
CLN3-225ENST00000566824 PIEZO2Q9H5I5 2752 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 ATMQ13315 3056 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 WDR91A4D1P6 747 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 URADA6NGE7 173 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 MANBAO00462 879 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 PLPP1O14494 284 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 PRPF4O43172 522 aaKnown RBP eCLIP18.47■□□□□ 0.55
CLN3-225ENST00000566824 MLYCDO95822 493 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 DHRS4L1P0CG22 281 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 CHN1P15882 459 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 SERPINB1P30740 379 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 SERPINB4P48594 390 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 PKNOX1P55347 436 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 OCA2Q04671 838 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 TTMPQ5BVD1 217 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 CFAP157Q5JU67 520 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 SCIMPQ6UWF3 145 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 OR6Y1Q8NGX8 325 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 ZNF717Q9BY31 904 aaPredicted RBP18.47■□□□□ 0.55
CLN3-225ENST00000566824 FAM117AQ9C073 453 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 TGIF2Q9GZN2 237 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 LANCL2Q9NS86 450 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 ZNF446Q9NWS9 450 aa18.47■□□□□ 0.55
CLN3-225ENST00000566824 FOXE1O00358 373 aaPredicted RBP18.46■□□□□ 0.55
CLN3-225ENST00000566824 ESRRBO95718 433 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 RECKO95980 971 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 CHRNGP07510 517 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 ATP5A1P25705 553 aaKnown RBP18.46■□□□□ 0.55
CLN3-225ENST00000566824 SERPINB3P29508 390 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 MC1RQ01726 317 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 ATP1A4Q13733 1029 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 TBR1Q16650 682 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 CRTC2Q53ET0 693 aaPredicted RBP18.46■□□□□ 0.55
CLN3-225ENST00000566824 FAAH2Q6GMR7 532 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 TRIM40Q6P9F5 258 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 ANKRD42Q8N9B4 389 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 METTL6Q8TCB7 284 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 EXTL1Q92935 676 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 REPS1Q96D71 796 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 FAR2Q96K12 515 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 CRB3Q9BUF7 120 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 ELOVL6Q9H5J4 265 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 ADGRE2Q9UHX3 823 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 C3orf18Q9UK00 162 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 LHX6Q9UPM6 363 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 HS3ST3B1Q9Y662 390 aa18.46■□□□□ 0.55
CLN3-225ENST00000566824 ATRXP46100 2492 aa18.46■□□□□ 0.54
CLN3-225ENST00000566824 UQCRHLA0A096LP55 91 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 TMEM120BA0PK00 339 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 IDSB3KWA1 339 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 SOCS6O14544 535 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 EEDO75530 441 aaKnown RBP18.45■□□□□ 0.54
CLN3-225ENST00000566824 CDC123O75794 336 aaPredicted RBP18.45■□□□□ 0.54
CLN3-225ENST00000566824 UQCRHP07919 91 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 PTX3P26022 381 aaPredicted RBP18.45■□□□□ 0.54
CLN3-225ENST00000566824 HNRNPFP52597 415 aaKnown RBP18.45■□□□□ 0.54
CLN3-225ENST00000566824 WDR4P57081 412 aaKnown RBP18.45■□□□□ 0.54
CLN3-225ENST00000566824 IFT88Q13099 833 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 CHAF1BQ13112 559 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 SSPNQ14714 243 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 LINC00303Q3SY05 128 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 TMEM35AQ53FP2 167 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 AGBL2Q5U5Z8 902 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 CPZQ66K79 652 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 CHSY3Q70JA7 882 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 MRGPREQ86SM8 312 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 TMEM52Q8NDY8 209 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 SELENOMQ8WWX9 145 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 C8orf44Q96CB5 159 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 SLC29A3Q9BZD2 475 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 VN1R1Q9GZP7 353 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 ZNF395Q9H8N7 513 aaPredicted RBP18.45■□□□□ 0.54
CLN3-225ENST00000566824 NXT1Q9UKK6 140 aaKnown RBP18.45■□□□□ 0.54
CLN3-225ENST00000566824 MKL2Q9ULH7 1088 aa18.45■□□□□ 0.54
CLN3-225ENST00000566824 GOLGA6L10A6NI86 522 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 TM9SF1O15321 606 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 ALOX12BO75342 701 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms