RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ST13P50502 369 aaKnown RBP19.46■□□□□ 0.71
CLN3-219ENST00000565778 PLA2G16P53816 162 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 IRF8Q02556 426 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 DLG1Q12959 904 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 LAPTM5Q13571 262 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 RUNX2Q13950 521 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 WHAMMP3Q1A5X7 153 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 MROH9Q5TGP6 573 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 SLC5A8Q8N695 610 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 NXNL1Q96CM4 212 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 TAAR6Q96RI8 345 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 EFCAB11Q9BUY7 163 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 REXO4Q9GZR2 422 aaKnown RBP19.46■□□□□ 0.71
CLN3-219ENST00000565778 NECTIN3Q9NQS3 549 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 ZDHHC18Q9NUE0 388 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 COPG2Q9UBF2 871 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 PLEKHB1Q9UF11 243 aaPredicted RBP19.46■□□□□ 0.71
CLN3-219ENST00000565778 A0A088AWK7 358 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 SUPT3HB4E1H0 165 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 PRAMEF4O60810 478 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 SUPT3HO75486 399 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 RNF224P0DH78 156 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 ZNF10P21506 573 aaPredicted RBP19.45■□□□□ 0.7
CLN3-219ENST00000565778 PHBP35232 272 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 CHIT1Q13231 466 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 UAP1Q16222 522 aaPredicted RBP19.45■□□□□ 0.7
CLN3-219ENST00000565778 INAQ16352 499 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 PAGE2BQ5JRK9 111 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 PRAMEF9Q5VWM5 478 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 TRIM40Q6P9F5 258 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 UTP23Q9BRU9 249 aaKnown RBP19.45■□□□□ 0.7
CLN3-219ENST00000565778 NPLQ9BXD5 320 aaPredicted RBP19.45■□□□□ 0.7
CLN3-219ENST00000565778 CDCP1Q9H5V8 836 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 ANKRD10Q9NXR5 420 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 PTPN13Q12923 2485 aa19.45■□□□□ 0.7
CLN3-219ENST00000565778 A1L4Q6 167 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 UBXN8O00124 270 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 E2F3O00716 465 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 B3GALT2O43825 422 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 CRYABP02511 175 aaKnown RBP19.44■□□□□ 0.7
CLN3-219ENST00000565778 CD96P40200 585 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 TUBA3CQ13748 450 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 BMPR2Q13873 1038 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 ZNF766Q5HY98 468 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 TUBA3EQ6PEY2 450 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 OR2L5Q8NG80 312 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 DNAJB8Q8NHS0 232 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 ELP5Q8TE02 316 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 WDR34Q96EX3 536 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 SLX1AQ9BQ83 275 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 IGSF5Q9NSI5 407 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 NUDT4Q9NZJ9 180 aa19.44■□□□□ 0.7
CLN3-219ENST00000565778 MTRF1LQ9UGC7 380 aaKnown RBP19.44■□□□□ 0.7
CLN3-219ENST00000565778 A0A087X1B8 175 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 TCRBV16S1A1N1A0A5B0 115 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 CLDN4O14493 209 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 MAN1A2O60476 641 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 KERAO60938 352 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 LDLRP01130 860 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 C2P06681 752 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 OC90Q02509 493 aaPredicted RBP19.43■□□□□ 0.7
CLN3-219ENST00000565778 TGM3Q08188 693 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 FAM83EQ2M2I3 478 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 C4orf17Q53FE4 359 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 ZNF324BQ6AW86 544 aaPredicted RBP19.43■□□□□ 0.7
CLN3-219ENST00000565778 ADNP2Q6IQ32 1131 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 CEP128Q6ZU80 1094 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 LRRC70Q7Z2Q7 622 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 VN1R5Q7Z5H4 357 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 RPS19BP1Q86WX3 136 aaKnown RBP19.43■□□□□ 0.7
CLN3-219ENST00000565778 KIF2BQ8N4N8 673 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 MMGT1Q8N4V1 131 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 KCTD4Q8WVF5 259 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 IFT81Q8WYA0 676 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 NR4A3Q92570 626 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 QRFPRQ96P65 431 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 F2RL3Q96RI0 385 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 ATOH8Q96SQ7 321 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 NPAS2Q99743 824 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 COPS7BQ9H9Q2 264 aaPredicted RBP19.43■□□□□ 0.7
CLN3-219ENST00000565778 PRTFDC1Q9NRG1 225 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 OPTCQ9UBM4 332 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 MMACHCQ9Y4U1 282 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 ASB1Q9Y576 335 aa19.43■□□□□ 0.7
CLN3-219ENST00000565778 USP9XQ93008 2570 aaPredicted RBP19.43■□□□□ 0.7
CLN3-219ENST00000565778 SCN2AQ99250 2005 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 IGKV3D-11A0A0A0MRZ8 115 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 WIPF3A6NGB9 483 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 GABRR3A8MPY1 467 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 SYCE1LA8MT33 242 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 K7EPI3 171 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 LRRTM2O43300 516 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 EPORP19235 508 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 CD22P20273 847 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 CASP2P42575 452 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 MSH2P43246 934 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 RAB38P57729 211 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 SRSF11Q05519 484 aaKnown RBP19.42■□□□□ 0.7
CLN3-219ENST00000565778 OR1C1Q15619 314 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 TBCCQ15814 346 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms