RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RAB40ALP0C0E4 278 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 BTN3A2P78410 334 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 TMEM35AQ53FP2 167 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 SH2D4BQ5SQS7 431 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 C10orf62Q5T681 223 aaPredicted RBP20.61■□□□□ 0.89
SNX1-210ENST00000560260 TRIM40Q6P9F5 258 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 SPSB2Q99619 263 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 ACPTQ9BZG2 426 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 TUBB1Q9H4B7 451 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 IGLV3-12A0A075B6K2 115 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 KLF7O75840 302 aaPredicted RBP20.6■□□□□ 0.89
SNX1-210ENST00000560260 SCELO95171 688 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 HSPA4LO95757 839 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 UROSP10746 265 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 NEFHP12036 1026 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 GRK2P25098 689 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 PTX3P26022 381 aaPredicted RBP20.6■□□□□ 0.89
SNX1-210ENST00000560260 SLC1A6P48664 564 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 EFNA3P52797 238 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 HMGCS1Q01581 520 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 TLE3Q04726 772 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 STX3Q13277 289 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 CUL3Q13618 768 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 NKG7Q16617 165 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 UGT3A2Q3SY77 523 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 CHSY3Q70JA7 882 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 ZC3H7AQ8IWR0 971 aaKnown RBP20.6■□□□□ 0.89
SNX1-210ENST00000560260 ZNF781Q8N8C0 355 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 SERPINI1Q99574 410 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 SLC26A1Q9H2B4 701 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 BRF2Q9HAW0 419 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 EML4Q9HC35 981 aaKnown RBP20.6■□□□□ 0.89
SNX1-210ENST00000560260 TRPC4Q9UBN4 977 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 ZMIZ1Q9ULJ6 1067 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 SLC12A4Q9UP95 1085 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 TRAF6Q9Y4K3 522 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 MAP4K5Q9Y4K4 846 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 PCDHGA6Q9Y5G7 932 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 URB1O60287 2271 aaKnown RBP20.6■□□□□ 0.89
SNX1-210ENST00000560260 ZZEF1O43149 2961 aa20.6■□□□□ 0.89
SNX1-210ENST00000560260 TPRP12270 2363 aaKnown RBP20.6■□□□□ 0.89
SNX1-210ENST00000560260 CCDC88CQ9P219 2028 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 A0A087WV48 116 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 VSTM2BA6NLU5 285 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 ULK1O75385 1050 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 JRKO75564 520 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 CRCPO75575 148 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 SEMA3DO95025 777 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 FGF4P08620 206 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 ATP5A1P25705 553 aaKnown RBP20.59■□□□□ 0.89
SNX1-210ENST00000560260 BSGP35613 385 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 CSTF3Q12996 717 aaKnown RBP20.59■□□□□ 0.89
SNX1-210ENST00000560260 RUNX2Q13950 521 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 VWA2Q5GFL6 755 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 CA13Q8N1Q1 262 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 KCNC2Q96PR1 638 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 TBCDQ9BTW9 1192 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 MRPL1Q9BYD6 325 aaKnown RBP20.59■□□□□ 0.89
SNX1-210ENST00000560260 RBCK1Q9BYM8 510 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 ACTL8Q9H568 366 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 MED4Q9NPJ6 270 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 FARSAQ9Y285 508 aaKnown RBP20.59■□□□□ 0.89
SNX1-210ENST00000560260 DNAJC15Q9Y5T4 150 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 MAP1BP46821 2468 aaKnown RBP20.59■□□□□ 0.89
SNX1-210ENST00000560260 NUP210LQ5VU65 1888 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 PCSK5Q92824 1860 aa20.59■□□□□ 0.89
SNX1-210ENST00000560260 ANKRD11Q6UB99 2663 aaPredicted RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 SERTM1A2A2V5 107 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 RRP8O43159 456 aaKnown RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 CHST10O43529 356 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 SNNO75324 88 aaPredicted RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 EEDO75530 441 aaKnown RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 ALBP02768 609 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 PIM1P11309 404 aaPredicted RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 HSD3B1P14060 373 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 HSD3B2P26439 372 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 PTPN4P29074 926 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 SSR2P43308 183 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 RAP1GDS1P52306 607 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 MTTPP55157 894 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 TBL3Q12788 808 aaKnown RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 SHISA6Q6ZSJ9 500 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 PRSS58Q8IYP2 241 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 OR51Q1Q8NH59 317 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 STT3BQ8TCJ2 826 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 KIAA1143Q96AT1 154 aaPredicted RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 RGMAQ96B86 450 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 FAR2Q96K12 515 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 CCNL2Q96S94 520 aaPredicted RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 SERINC2Q96SA4 455 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 SOX17Q9H6I2 414 aaPredicted RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 GPN3Q9UHW5 284 aaPredicted RBP20.58■□□□□ 0.89
SNX1-210ENST00000560260 HAO1Q9UJM8 370 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 TCFL5Q9UL49 500 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 CCL27Q9Y4X3 112 aa20.58■□□□□ 0.89
SNX1-210ENST00000560260 UMODP07911 640 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 HIST1H1TP22492 207 aaPredicted RBP20.57■□□□□ 0.88
SNX1-210ENST00000560260 XCR1P46094 333 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 OCRLQ01968 901 aa20.57■□□□□ 0.88
SNX1-210ENST00000560260 ZNF33BQ06732 778 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms